Strain Fitness in Escherichia coli BW25113 around b3772

Experiment: Ying_Nucleobase14 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 2
3,952,374	-	ilvD	b3771	0.47	-2.8
3,952,374	-	ilvD	b3771	0.47	-3.2
3,952,433	+	ilvD	b3771	0.50	-4.6
3,952,441	-	ilvD	b3771	0.51	-5.1
3,952,463	+	ilvD	b3771	0.52	-5.2
3,952,465	+	ilvD	b3771	0.52	-4.6
3,952,465	+	ilvD	b3771	0.52	-5.2
3,952,476	+	ilvD	b3771	0.53	-3.5
3,952,527	+	ilvD	b3771	0.55	-2.6
3,952,571	+	ilvD	b3771	0.58	-5.2
3,952,589	+	ilvD	b3771	0.59	-1.7
3,952,589	+	ilvD	b3771	0.59	-3.3
3,952,594	+	ilvD	b3771	0.59	-2.0
3,952,596	-	ilvD	b3771	0.59	-5.0
3,952,605	+	ilvD	b3771	0.60	-5.8
3,952,605	+	ilvD	b3771	0.60	-3.2
3,952,605	+	ilvD	b3771	0.60	-5.7
3,952,675	-	ilvD	b3771	0.63	-4.5
3,952,687	-	ilvD	b3771	0.64	-4.6
3,952,772	+	ilvD	b3771	0.69	-5.1
3,952,777	+	ilvD	b3771	0.69	-4.4
3,952,777	+	ilvD	b3771	0.69	-5.5
3,952,869	+	ilvD	b3771	0.74	-3.9
3,952,869	+	ilvD	b3771	0.74	-5.8
3,952,916	-	ilvD	b3771	0.76	-4.1
3,952,931	-	ilvD	b3771	0.77	-1.4
3,952,957	+	ilvD	b3771	0.79	-4.5
3,952,976	+	ilvD	b3771	0.80	-6.1
3,952,976	+	ilvD	b3771	0.80	-4.9
3,953,020	+	ilvD	b3771	0.82	-5.7
3,953,053	-	ilvD	b3771	0.84	-5.8
3,953,067	-	ilvD	b3771	0.85	-4.8
3,953,118	-	ilvD	b3771	0.87	-3.1
3,953,118	-	ilvD	b3771	0.87	-3.2
3,953,120	+	ilvD	b3771	0.87	-4.1
3,953,120	+	ilvD	b3771	0.87	-4.5
3,953,161	+	ilvD	b3771	0.90	-5.3
3,953,178	-				-2.1
3,953,179	-				-5.1
3,953,179	-				-3.9
3,953,179	-				-5.0
3,953,190	-				-5.3
3,953,193	-				-5.2
3,953,229	-				-4.6
3,953,237	-				-4.2
3,953,242	-				-4.8
3,953,258	+				-4.1
3,953,372	-				-4.1
3,953,381	+				-3.7
3,953,381	+				-3.2
3,953,451	-				-4.6
3,953,480	+				-7.8
3,953,489	-				-3.0
3,953,514	-	ilvA	b3772	0.10	-4.2
3,953,515	+	ilvA	b3772	0.10	-4.3
3,953,525	+	ilvA	b3772	0.11	-4.5
3,953,532	+	ilvA	b3772	0.12	-4.8
3,953,532	+	ilvA	b3772	0.12	-6.0
3,953,532	+	ilvA	b3772	0.12	-3.2
3,953,532	+	ilvA	b3772	0.12	-4.5
3,953,532	+	ilvA	b3772	0.12	-4.2
3,953,540	-	ilvA	b3772	0.12	-3.5
3,953,614	+	ilvA	b3772	0.17	-5.1
3,953,614	+	ilvA	b3772	0.17	-5.4
3,953,646	-	ilvA	b3772	0.19	-5.9
3,953,657	+	ilvA	b3772	0.20	-3.4
3,953,674	-	ilvA	b3772	0.21	-5.6
3,953,712	-	ilvA	b3772	0.23	-3.8
3,953,714	+	ilvA	b3772	0.23	-4.1
3,953,735	+	ilvA	b3772	0.25	-4.7
3,953,743	-	ilvA	b3772	0.25	-2.7
3,953,792	+	ilvA	b3772	0.28	-4.0
3,953,795	-	ilvA	b3772	0.29	-4.7
3,953,802	+	ilvA	b3772	0.29	-4.4
3,953,806	+	ilvA	b3772	0.29	-6.0
3,953,856	+	ilvA	b3772	0.32	-2.6
3,953,856	+	ilvA	b3772	0.32	-4.7
3,953,873	+	ilvA	b3772	0.34	-5.4
3,953,888	+	ilvA	b3772	0.35	-2.6
3,953,888	+	ilvA	b3772	0.35	-3.2
3,953,902	+	ilvA	b3772	0.35	-3.6
3,953,902	+	ilvA	b3772	0.35	-4.1
3,953,902	+	ilvA	b3772	0.35	-2.7
3,953,902	+	ilvA	b3772	0.35	-2.7
3,954,148	+	ilvA	b3772	0.51	-5.8
3,954,211	+	ilvA	b3772	0.55	-4.0
3,954,214	+	ilvA	b3772	0.56	-4.4
3,954,214	+	ilvA	b3772	0.56	-3.3
3,954,235	-	ilvA	b3772	0.57	-4.9
3,954,333	+	ilvA	b3772	0.63	-4.4
3,954,333	+	ilvA	b3772	0.63	-3.3
3,954,433	-	ilvA	b3772	0.70	-4.5
3,954,498	+	ilvA	b3772	0.74	-3.7
3,954,498	+	ilvA	b3772	0.74	-5.1
3,954,511	-	ilvA	b3772	0.75	-3.2
3,954,511	-	ilvA	b3772	0.75	-4.4
3,954,516	+	ilvA	b3772	0.75	-4.5
3,954,524	-	ilvA	b3772	0.76	-5.6
3,954,524	-	ilvA	b3772	0.76	-5.6
3,954,524	-	ilvA	b3772	0.76	-4.5
3,954,524	-	ilvA	b3772	0.76	-3.3
3,954,524	-	ilvA	b3772	0.76	-4.8
3,954,608	-	ilvA	b3772	0.81	-5.5
3,954,620	-	ilvA	b3772	0.82	-4.8
3,954,634	+	ilvA	b3772	0.83	-6.1
3,954,661	-	ilvA	b3772	0.85	-4.5
3,954,661	-	ilvA	b3772	0.85	-3.9
3,954,700	+	ilvA	b3772	0.87	-3.4
3,954,700	+	ilvA	b3772	0.87	-4.5
3,954,711	+	ilvA	b3772	0.88	-4.6
3,954,712	+	ilvA	b3772	0.88	-4.5
3,954,712	+	ilvA	b3772	0.88	-4.4
3,954,762	-				-4.2
3,954,764	+				-3.5
3,954,774	-				-4.8
3,954,923	-				-0.8
3,954,929	+				+0.2
3,954,930	+				+0.4
3,954,938	-				-0.8
3,955,105	-	ilvY	b3773	0.17	-3.5
3,955,105	-	ilvY	b3773	0.17	-5.4
3,955,105	-	ilvY	b3773	0.17	-3.3
3,955,105	-	ilvY	b3773	0.17	-3.5
3,955,169	+	ilvY	b3773	0.24	-4.8
3,955,225	+	ilvY	b3773	0.31	-5.2
3,955,225	+	ilvY	b3773	0.31	-3.4
3,955,233	-	ilvY	b3773	0.32	-4.6
3,955,233	-	ilvY	b3773	0.32	-5.8
3,955,283	+	ilvY	b3773	0.37	-2.2
3,955,291	-	ilvY	b3773	0.38	-4.5
3,955,292	+	ilvY	b3773	0.38	-3.9
3,955,317	+	ilvY	b3773	0.41	-4.3
3,955,317	+	ilvY	b3773	0.41	-4.3
3,955,330	-	ilvY	b3773	0.43	-4.0
3,955,356	-	ilvY	b3773	0.45	-4.6
3,955,356	-	ilvY	b3773	0.45	-2.9
3,955,458	-	ilvY	b3773	0.57	-4.7
3,955,482	-	ilvY	b3773	0.60	-5.1
3,955,482	-	ilvY	b3773	0.60	-4.2
3,955,483	+	ilvY	b3773	0.60	-3.4
3,955,498	-	ilvY	b3773	0.61	-4.6
3,955,505	+	ilvY	b3773	0.62	-3.4
3,955,540	-	ilvY	b3773	0.66	-3.1
3,955,540	-	ilvY	b3773	0.66	-4.9
3,955,540	-	ilvY	b3773	0.66	-4.4
3,955,620	-	ilvY	b3773	0.75	-3.5
3,955,622	-	ilvY	b3773	0.75	-4.4
3,955,660	+	ilvY	b3773	0.79	-2.0
3,955,719	-	ilvY	b3773	0.86	-5.4
3,955,730	+	ilvY	b3773	0.87	-2.4
3,955,740	+	ilvY	b3773	0.88	-2.5
3,955,749	+	ilvY	b3773	0.89	-2.3
3,955,749	+	ilvY	b3773	0.89	-1.3
3,955,767	+				+0.0
3,955,767	+				-1.7
3,955,774	+				+0.3
3,955,774	+				-1.8
3,955,860	-				-3.1