Strain Fitness in Escherichia coli BW25113 around b1378

Experiment: Ying_Nucleobase14 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 2
1,434,295	+	ompN	b1377	0.45	+0.4
1,434,347	-	ompN	b1377	0.50	-1.6
1,434,357	-	ompN	b1377	0.51	+0.3
1,434,397	+	ompN	b1377	0.54	+1.7
1,434,523	+	ompN	b1377	0.65	+3.2
1,434,523	+	ompN	b1377	0.65	+0.6
1,434,570	+	ompN	b1377	0.69	+1.5
1,434,633	+	ompN	b1377	0.75	+3.2
1,434,656	+	ompN	b1377	0.77	-1.3
1,434,753	+	ompN	b1377	0.85	+2.2
1,434,808	+				+2.2
1,435,326	-				-0.2
1,435,374	-				-1.1
1,435,571	+				+0.4
1,435,584	+				+1.1
1,435,584	+				+1.1
1,435,609	-				-0.1
1,435,887	-	ydbK	b1378	0.17	+0.4
1,435,887	-	ydbK	b1378	0.17	+0.4
1,435,915	-	ydbK	b1378	0.18	+0.4
1,435,915	-	ydbK	b1378	0.18	+0.2
1,436,058	+	ydbK	b1378	0.22	+0.1
1,436,279	+	ydbK	b1378	0.28	-0.1
1,436,310	-	ydbK	b1378	0.29	+0.1
1,436,510	-	ydbK	b1378	0.35	+0.1
1,436,561	+	ydbK	b1378	0.36	+0.3
1,436,643	+	ydbK	b1378	0.39	-1.5
1,436,748	-	ydbK	b1378	0.42	+0.5
1,436,857	-	ydbK	b1378	0.45	+0.6
1,437,029	-	ydbK	b1378	0.50	-0.5
1,437,120	+	ydbK	b1378	0.52	+0.5
1,437,120	+	ydbK	b1378	0.52	-0.8
1,437,254	-	ydbK	b1378	0.56	+0.5
1,437,369	+	ydbK	b1378	0.59	+0.0
1,437,799	-	ydbK	b1378	0.71	+0.7
1,437,832	+	ydbK	b1378	0.72	+0.4
1,438,460	+				+0.1
1,438,501	+				-0.5
1,438,540	-				+0.2
1,438,709	-				+0.4
1,438,815	+				-0.1
1,438,823	-				+0.0
1,438,926	-				+0.3
1,438,926	-				-0.5
1,438,997	+				-0.3
1,438,998	-				-1.0
1,439,084	-				+0.2
1,439,084	-				+0.4
1,439,137	-	ydbJ	b4529	0.21	+0.1
1,439,365	+				+0.3
1,439,401	-	hslJ	b1379	0.13	-0.6
1,439,561	-	hslJ	b1379	0.51	+0.7
1,439,561	-	hslJ	b1379	0.51	-0.1
1,439,591	+	hslJ	b1379	0.58	+0.2
1,439,591	+	hslJ	b1379	0.58	+1.4
1,439,654	+	hslJ	b1379	0.73	+0.3