Strain Fitness in Escherichia coli BW25113 around b0112

Experiment: Ying_Nucleobase14 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 2
119,191	+	ampD	b0110	0.83	+0.1
119,191	+	ampD	b0110	0.83	-0.4
119,274	+				+0.0
119,339	+				-0.5
119,339	+				+0.1
119,499	-	ampE	b0111	0.25	-4.5
119,499	-	ampE	b0111	0.25	-0.2
119,522	+	ampE	b0111	0.28	-3.0
119,528	-	ampE	b0111	0.29	-0.5
119,555	-	ampE	b0111	0.32	+0.3
119,555	-	ampE	b0111	0.32	-0.0
119,558	-	ampE	b0111	0.32	+0.6
119,567	+	ampE	b0111	0.33	-0.7
119,567	+	ampE	b0111	0.33	+0.5
119,753	-	ampE	b0111	0.55	-0.3
119,755	-	ampE	b0111	0.55	+0.5
119,755	-	ampE	b0111	0.55	-0.1
119,756	+	ampE	b0111	0.56	+0.4
119,772	-	ampE	b0111	0.57	-0.1
119,786	+	ampE	b0111	0.59	-0.1
119,786	+	ampE	b0111	0.59	-0.2
119,799	-	ampE	b0111	0.61	+0.3
119,799	-	ampE	b0111	0.61	-0.4
119,836	-	ampE	b0111	0.65	+0.3
119,836	-	ampE	b0111	0.65	-0.3
119,915	+	ampE	b0111	0.74	+0.3
119,961	+	ampE	b0111	0.80	-0.1
119,961	+	ampE	b0111	0.80	-0.7
119,983	+	ampE	b0111	0.82	+0.2
119,985	-	ampE	b0111	0.82	-0.6
120,006	-	ampE	b0111	0.85	+0.6
120,013	-	ampE	b0111	0.86	-0.2
120,013	-	ampE	b0111	0.86	-1.9
120,014	+	ampE	b0111	0.86	-0.9
120,014	+	ampE	b0111	0.86	-0.4
120,014	+	ampE	b0111	0.86	-0.1
120,014	+	ampE	b0111	0.86	+0.3
120,037	-	ampE	b0111	0.88	-0.0
120,138	-				-0.2
120,139	+				-0.4
120,153	-				+0.0
120,155	+				+0.0
120,237	-				-0.3
120,251	-				-0.0
120,254	+				+0.2
120,266	-				-0.3
120,266	-				-1.2
120,340	-	aroP	b0112	0.12	-0.2
120,362	-	aroP	b0112	0.13	-0.5
120,377	+	aroP	b0112	0.14	-0.2
120,389	-	aroP	b0112	0.15	-0.3
120,433	+	aroP	b0112	0.19	+0.5
120,461	+	aroP	b0112	0.21	-0.1
120,484	+	aroP	b0112	0.22	-0.0
120,502	-	aroP	b0112	0.24	-0.8
120,502	-	aroP	b0112	0.24	-0.6
120,514	-	aroP	b0112	0.24	-0.2
120,514	-	aroP	b0112	0.24	-0.4
120,518	+	aroP	b0112	0.25	+0.1
120,560	-	aroP	b0112	0.28	-0.1
120,571	-	aroP	b0112	0.29	-4.8
120,611	-	aroP	b0112	0.32	-1.0
120,611	-	aroP	b0112	0.32	-0.9
120,647	-	aroP	b0112	0.34	+0.2
120,647	-	aroP	b0112	0.34	-0.6
120,675	+	aroP	b0112	0.36	-0.2
120,683	-	aroP	b0112	0.37	-0.4
120,706	+	aroP	b0112	0.38	-0.2
120,712	+	aroP	b0112	0.39	+0.1
120,712	+	aroP	b0112	0.39	-0.4
120,752	+	aroP	b0112	0.42	-0.6
120,753	-	aroP	b0112	0.42	-0.3
120,753	-	aroP	b0112	0.42	-0.3
120,847	+	aroP	b0112	0.49	-0.5
120,854	-	aroP	b0112	0.49	-0.7
120,905	-	aroP	b0112	0.53	-0.5
120,905	-	aroP	b0112	0.53	-0.6
120,956	-	aroP	b0112	0.57	-0.5
120,956	-	aroP	b0112	0.57	-0.9
121,032	-	aroP	b0112	0.62	-0.3
121,032	-	aroP	b0112	0.62	-0.2
121,032	-	aroP	b0112	0.62	+0.1
121,054	+	aroP	b0112	0.64	-0.0
121,087	+	aroP	b0112	0.66	+0.2
121,095	-	aroP	b0112	0.67	-0.6
121,128	-	aroP	b0112	0.69	-0.0
121,128	-	aroP	b0112	0.69	-0.0
121,146	-	aroP	b0112	0.70	-0.5
121,146	-	aroP	b0112	0.70	-0.8
121,266	-	aroP	b0112	0.79	-0.7
121,266	-	aroP	b0112	0.79	+0.3
121,335	-	aroP	b0112	0.84	-0.1
121,374	-	aroP	b0112	0.87	-0.5
121,374	-	aroP	b0112	0.87	-0.3
121,431	+				+1.3
121,431	+				-0.3
121,458	-				-0.4
121,469	-				-0.1
121,514	+				-0.4
121,531	-				-0.2
121,716	-				+0.1
121,716	-				+0.3
121,723	-				+0.2
121,723	-				+0.1
121,738	-				+0.2
122,355	+	pdhR	b0113	0.34	-4.1
122,358	+	pdhR	b0113	0.35	-3.3
122,369	+	pdhR	b0113	0.36	-2.5
122,416	+	pdhR	b0113	0.42	-3.0
122,442	+	pdhR	b0113	0.46	-4.7
122,471	+	pdhR	b0113	0.50	-5.1
122,489	+	pdhR	b0113	0.52	-3.6
122,489	+	pdhR	b0113	0.52	-3.2
122,489	+	pdhR	b0113	0.52	-1.6
122,500	+	pdhR	b0113	0.53	-1.9
122,537	+	pdhR	b0113	0.58	-4.3