Strain Fitness in Escherichia coli BW25113 around b4653

Experiment: Ying_Nucleobase14 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 2
3,833,448	+	yicJ	b3657	0.63	+0.1
3,833,468	-	yicJ	b3657	0.65	-0.6
3,833,468	-	yicJ	b3657	0.65	-0.0
3,833,488	+	yicJ	b3657	0.66	+0.4
3,833,524	-	yicJ	b3657	0.69	-0.5
3,833,665	-	yicJ	b3657	0.79	+0.8
3,833,675	-	yicJ	b3657	0.80	-0.8
3,833,675	-	yicJ	b3657	0.80	+1.0
3,833,683	+	yicJ	b3657	0.80	-0.0
3,833,703	+	yicJ	b3657	0.82	-0.4
3,833,755	-	yicJ	b3657	0.86	+0.5
3,833,757	-	yicJ	b3657	0.86	+0.0
3,833,781	+	yicJ	b3657	0.88	+0.6
3,833,781	+	yicJ	b3657	0.88	+0.2
3,833,784	+	yicJ	b3657	0.88	+0.6
3,833,784	+	yicJ	b3657	0.88	-0.1
3,833,901	+				+0.0
3,833,932	+				-0.0
3,833,932	+				-0.1
3,833,953	-				+0.5
3,833,966	+				+0.3
3,833,969	+				-0.9
3,833,969	+				-0.7
3,833,969	+				-0.4
3,833,972	+				-0.4
3,834,058	+				-0.2
3,834,123	+				-0.2
3,834,150	-				+0.4
3,834,150	-				+0.2
3,834,202	-				+0.0
3,834,203	+				+0.5
3,834,225	+				+0.7
3,834,225	+				+0.1
3,834,269	-	selC	b3658	0.25	-0.7
3,834,312	-	selC	b3658	0.71	+0.3
3,834,314	+	selC	b3658	0.73	+0.2
3,834,367	+				+0.1
3,834,367	+				+0.4
3,834,381	-				+0.0
3,834,381	-				-0.1
3,834,423	+				+0.4
3,834,425	-				-1.0
3,834,433	+				-0.3
3,834,441	-				+0.5
3,834,462	+	yicT	b4653	0.11	-0.1
3,834,509	-	yicT	b4653	0.46	+1.6
3,834,509	-	yicT	b4653	0.46	+1.6
3,834,564	+	yicT	b4653	0.88	-0.8
3,834,566	+				+0.1
3,834,566	-				+0.9
3,834,567	-				+0.5
3,834,567	-				+0.3
3,834,568	+				-1.2
3,834,568	+				+0.1
3,834,570	+				+1.2
3,834,570	+				+0.4
3,834,576	-				+1.2
3,834,577	+				-0.0
3,834,583	+				-0.8
3,834,591	+				+0.3
3,834,612	+				-0.2
3,834,612	+				+0.7
3,834,620	-				+2.9
3,834,920	-				+2.9
3,834,996	-				+1.3
3,834,996	-				+2.5
3,835,055	-				+1.3
3,835,055	-				-0.3
3,835,069	+				+1.9
3,835,076	+				+0.8
3,835,113	+	setC	b3659	0.12	+0.4
3,835,118	+	setC	b3659	0.12	+2.2
3,835,118	+	setC	b3659	0.12	-1.2
3,835,126	-	setC	b3659	0.13	-0.9
3,835,127	-	setC	b3659	0.13	+0.1
3,835,127	-	setC	b3659	0.13	-1.4
3,835,129	-	setC	b3659	0.13	+1.0
3,835,129	-	setC	b3659	0.13	+0.4
3,835,154	-	setC	b3659	0.15	+0.9
3,835,154	-	setC	b3659	0.15	-2.3
3,835,155	-	setC	b3659	0.15	+2.6
3,835,155	-	setC	b3659	0.15	+0.4
3,835,196	+	setC	b3659	0.19	+1.9
3,835,196	+	setC	b3659	0.19	+1.3
3,835,198	-	setC	b3659	0.19	-0.3
3,835,198	-	setC	b3659	0.19	+2.0
3,835,204	-	setC	b3659	0.19	+0.6
3,835,204	-	setC	b3659	0.19	+1.0
3,835,204	-	setC	b3659	0.19	+0.6
3,835,224	-	setC	b3659	0.21	-0.4
3,835,224	-	setC	b3659	0.21	-0.0
3,835,224	-	setC	b3659	0.21	+1.0
3,835,236	-	setC	b3659	0.22	+1.9
3,835,257	-	setC	b3659	0.24	+0.1
3,835,257	-	setC	b3659	0.24	+0.4
3,835,259	-	setC	b3659	0.24	+0.6
3,835,259	-	setC	b3659	0.24	-0.0
3,835,283	-	setC	b3659	0.26	+0.6
3,835,291	+	setC	b3659	0.27	+1.9
3,835,304	-	setC	b3659	0.28	-0.4
3,835,304	-	setC	b3659	0.28	+0.5
3,835,306	-	setC	b3659	0.28	-0.1
3,835,314	-	setC	b3659	0.29	+0.4
3,835,369	-	setC	b3659	0.33	-0.1
3,835,385	+	setC	b3659	0.35	+1.5
3,835,385	+	setC	b3659	0.35	+0.6
3,835,387	-	setC	b3659	0.35	+0.5
3,835,393	-	setC	b3659	0.35	+0.4
3,835,393	-	setC	b3659	0.35	-0.4
3,835,393	-	setC	b3659	0.35	+0.3
3,835,396	+	setC	b3659	0.35	+1.6
3,835,396	+	setC	b3659	0.35	+0.3
3,835,404	-	setC	b3659	0.36	-0.7
3,835,420	+	setC	b3659	0.37	+0.2
3,835,420	+	setC	b3659	0.37	-0.4
3,835,431	-	setC	b3659	0.38	-0.2
3,835,433	-	setC	b3659	0.39	+0.5
3,835,433	-	setC	b3659	0.39	-0.2
3,835,433	-	setC	b3659	0.39	+0.4
3,835,433	-	setC	b3659	0.39	+0.8
3,835,434	+	setC	b3659	0.39	+0.2
3,835,434	+	setC	b3659	0.39	+0.3
3,835,438	-	setC	b3659	0.39	-0.1
3,835,442	-	setC	b3659	0.39	+0.1
3,835,448	+	setC	b3659	0.40	+0.4
3,835,453	-	setC	b3659	0.40	+1.2
3,835,460	+	setC	b3659	0.41	+0.3
3,835,468	-	setC	b3659	0.42	-0.3
3,835,468	-	setC	b3659	0.42	-1.2
3,835,489	+	setC	b3659	0.43	-0.9
3,835,489	+	setC	b3659	0.43	-0.9
3,835,495	+	setC	b3659	0.44	-0.9
3,835,507	-	setC	b3659	0.45	+0.1
3,835,540	+	setC	b3659	0.48	+1.6
3,835,542	-	setC	b3659	0.48	-0.2
3,835,542	-	setC	b3659	0.48	+2.1