Strain Fitness in Escherichia coli BW25113 around b3849

Experiment: Ying_Nucleobase14 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 2
4,030,280	+	pepQ	b3847	0.82	-0.0
4,030,293	+	pepQ	b3847	0.83	+0.5
4,030,298	+	pepQ	b3847	0.84	-0.1
4,030,314	-	pepQ	b3847	0.85	-0.1
4,030,328	+	pepQ	b3847	0.86	+0.6
4,030,329	-	pepQ	b3847	0.86	-0.4
4,030,329	-	pepQ	b3847	0.86	-0.3
4,030,329	-	pepQ	b3847	0.86	+0.4
4,030,336	-	pepQ	b3847	0.86	-0.5
4,030,336	-	pepQ	b3847	0.86	-0.2
4,030,338	+	pepQ	b3847	0.87	+0.4
4,030,350	-	pepQ	b3847	0.88	-0.1
4,030,384	-				+0.7
4,030,394	-				-0.7
4,030,445	+				-0.6
4,030,467	-				+0.1
4,030,467	-				+0.4
4,030,579	+	yigZ	b3848	0.10	+0.6
4,030,642	+	yigZ	b3848	0.21	-0.4
4,030,642	+	yigZ	b3848	0.21	-0.0
4,030,647	-	yigZ	b3848	0.21	-0.2
4,030,664	+	yigZ	b3848	0.24	-0.1
4,030,666	+	yigZ	b3848	0.25	+0.2
4,030,670	-	yigZ	b3848	0.25	+0.1
4,030,670	-	yigZ	b3848	0.25	-0.1
4,030,670	-	yigZ	b3848	0.25	-0.0
4,030,672	-	yigZ	b3848	0.26	+0.6
4,030,672	-	yigZ	b3848	0.26	+0.3
4,030,682	+	yigZ	b3848	0.27	+0.8
4,030,690	-	yigZ	b3848	0.28	-1.0
4,030,702	+	yigZ	b3848	0.30	-0.1
4,030,806	+	yigZ	b3848	0.47	+0.1
4,030,806	+	yigZ	b3848	0.47	+0.4
4,030,812	-	yigZ	b3848	0.48	-0.6
4,030,836	-	yigZ	b3848	0.52	+0.6
4,030,836	-	yigZ	b3848	0.52	+0.6
4,030,836	-	yigZ	b3848	0.52	+0.5
4,030,836	-	yigZ	b3848	0.52	-0.1
4,030,843	-	yigZ	b3848	0.53	-0.1
4,030,843	-	yigZ	b3848	0.53	+0.4
4,030,848	-	yigZ	b3848	0.54	-0.4
4,030,848	-	yigZ	b3848	0.54	-0.2
4,030,900	+	yigZ	b3848	0.63	+0.3
4,030,900	+	yigZ	b3848	0.63	+0.1
4,030,924	-	yigZ	b3848	0.67	+0.2
4,030,925	-	yigZ	b3848	0.67	+0.3
4,030,932	+	yigZ	b3848	0.68	+0.0
4,030,948	-	yigZ	b3848	0.70	+0.4
4,030,955	+	yigZ	b3848	0.72	-0.1
4,030,956	-	yigZ	b3848	0.72	-0.0
4,030,988	-	yigZ	b3848	0.77	+0.2
4,031,038	-	yigZ	b3848	0.85	-2.3
4,031,162	+				-0.9
4,031,162	+				-1.2
4,031,189	-				-2.3
4,031,204	-				-3.9
4,031,211	+				-2.6
4,031,226	+				-1.3
4,031,226	+				-1.7
4,031,241	+				-1.4
4,031,241	+				-1.3
4,031,254	+				-1.9
4,031,260	-				-2.9
4,031,260	-				-3.7
4,031,280	+				-3.1
4,031,285	+				-1.1
4,031,310	+				-3.1
4,031,321	+	trkH	b3849	0.11	-0.8
4,031,326	+	trkH	b3849	0.11	-2.8
4,031,329	-	trkH	b3849	0.11	-3.3
4,031,357	+	trkH	b3849	0.13	-4.7
4,031,374	-	trkH	b3849	0.14	-3.1
4,031,384	-	trkH	b3849	0.15	-4.1
4,031,392	+	trkH	b3849	0.15	-2.3
4,031,392	+	trkH	b3849	0.15	-1.1
4,031,400	-	trkH	b3849	0.16	-1.1
4,031,400	-	trkH	b3849	0.16	-2.1
4,031,402	+	trkH	b3849	0.16	-3.0
4,031,402	+	trkH	b3849	0.16	-1.7
4,031,402	+	trkH	b3849	0.16	-0.7
4,031,410	-	trkH	b3849	0.17	-0.8
4,031,410	-	trkH	b3849	0.17	-2.9
4,031,410	-	trkH	b3849	0.17	-2.3
4,031,410	-	trkH	b3849	0.17	-2.1
4,031,410	-	trkH	b3849	0.17	+0.2
4,031,412	+	trkH	b3849	0.17	-2.7
4,031,429	+	trkH	b3849	0.18	-2.7
4,031,429	+	trkH	b3849	0.18	-2.0
4,031,445	+	trkH	b3849	0.19	-1.4
4,031,492	-	trkH	b3849	0.22	-3.9
4,031,492	-	trkH	b3849	0.22	-3.7
4,031,494	+	trkH	b3849	0.22	-3.0
4,031,497	-	trkH	b3849	0.23	-3.2
4,031,499	+	trkH	b3849	0.23	-4.2
4,031,507	-	trkH	b3849	0.23	-0.6
4,031,513	+	trkH	b3849	0.24	-1.3
4,031,522	-	trkH	b3849	0.24	-2.1
4,031,527	+	trkH	b3849	0.25	-2.3
4,031,527	+	trkH	b3849	0.25	-0.6
4,031,531	-	trkH	b3849	0.25	-3.0
4,031,531	-	trkH	b3849	0.25	-2.2
4,031,544	-	trkH	b3849	0.26	-1.0
4,031,544	-	trkH	b3849	0.26	-1.7
4,031,575	-	trkH	b3849	0.28	-0.4
4,031,575	-	trkH	b3849	0.28	-0.2
4,031,587	-	trkH	b3849	0.29	-3.1
4,031,587	-	trkH	b3849	0.29	-1.3
4,031,636	-	trkH	b3849	0.32	-2.4
4,031,636	-	trkH	b3849	0.32	-4.4
4,031,637	+	trkH	b3849	0.32	-0.6
4,031,639	+	trkH	b3849	0.32	-1.1
4,031,642	+	trkH	b3849	0.33	-2.4
4,031,652	-	trkH	b3849	0.33	-2.6
4,031,728	+	trkH	b3849	0.39	-0.3
4,031,728	+	trkH	b3849	0.39	-1.3
4,031,787	+	trkH	b3849	0.43	-0.1
4,031,816	-	trkH	b3849	0.45	-4.1
4,031,857	-	trkH	b3849	0.47	-3.8
4,031,884	-	trkH	b3849	0.49	-1.8
4,031,886	-	trkH	b3849	0.49	-2.7
4,031,886	-	trkH	b3849	0.49	-1.3
4,031,944	+	trkH	b3849	0.53	-2.7
4,032,035	+	trkH	b3849	0.60	-2.6
4,032,056	+	trkH	b3849	0.61	-2.9
4,032,064	-	trkH	b3849	0.62	-3.1
4,032,064	-	trkH	b3849	0.62	-4.3
4,032,078	+	trkH	b3849	0.63	-2.5
4,032,078	+	trkH	b3849	0.63	-0.3
4,032,102	-	trkH	b3849	0.64	-3.6
4,032,136	+	trkH	b3849	0.67	-3.5
4,032,142	-	trkH	b3849	0.67	-1.2
4,032,245	-	trkH	b3849	0.74	-2.1
4,032,253	+	trkH	b3849	0.75	-2.6
4,032,287	+	trkH	b3849	0.77	-1.2
4,032,287	+	trkH	b3849	0.77	-1.4
4,032,298	-	trkH	b3849	0.78	-1.9
4,032,340	-	trkH	b3849	0.81	-2.1
4,032,386	-	trkH	b3849	0.84	-3.1
4,032,421	+	trkH	b3849	0.86	-1.6
4,032,425	-	trkH	b3849	0.87	-1.3
4,032,425	-	trkH	b3849	0.87	-1.2
4,032,433	+	trkH	b3849	0.87	-1.5
4,032,433	+	trkH	b3849	0.87	-2.3
4,032,452	+	trkH	b3849	0.88	-3.9
4,032,505	-				-2.6
4,032,505	-				+1.2
4,032,509	+				-2.7
4,032,521	-				-0.1
4,032,592	-				-1.4
4,032,604	+				-3.6
4,032,614	+				-0.0
4,032,622	+				-0.1
4,032,624	-				+0.0
4,032,960	-	hemG	b3850	0.60	+2.9