Strain Fitness in Escherichia coli BW25113 around b3671

Experiment: Ying_Nucleobase14 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 2
3,848,129	+				+0.7
3,848,129	+				+0.5
3,848,163	-				+0.6
3,848,165	+				+0.0
3,848,193	+				-0.2
3,848,193	+				-0.1
3,848,196	-				+0.5
3,848,237	+	uhpA	b3669	0.13	-0.3
3,848,250	-	uhpA	b3669	0.15	+0.6
3,848,261	+	uhpA	b3669	0.17	-0.1
3,848,285	-	uhpA	b3669	0.21	-0.6
3,848,370	-	uhpA	b3669	0.36	-0.3
3,848,439	+	uhpA	b3669	0.47	+2.9
3,848,492	-	uhpA	b3669	0.56	-1.0
3,848,492	-	uhpA	b3669	0.56	-0.9
3,848,494	+	uhpA	b3669	0.57	+1.4
3,848,494	+	uhpA	b3669	0.57	-0.1
3,848,494	+	uhpA	b3669	0.57	-0.4
3,848,494	+	uhpA	b3669	0.57	+0.3
3,848,504	+	uhpA	b3669	0.58	-0.7
3,848,504	+	uhpA	b3669	0.58	+0.2
3,848,524	-	uhpA	b3669	0.62	-0.3
3,848,524	-	uhpA	b3669	0.62	-0.4
3,848,524	-	uhpA	b3669	0.62	+0.3
3,848,526	-	uhpA	b3669	0.62	-0.4
3,848,565	-	uhpA	b3669	0.69	+0.8
3,848,565	-	uhpA	b3669	0.69	-0.6
3,848,571	+	uhpA	b3669	0.70	-0.3
3,848,571	+	uhpA	b3669	0.70	+0.5
3,848,577	+	uhpA	b3669	0.71	+0.1
3,848,585	-	uhpA	b3669	0.72	-0.4
3,848,595	+	uhpA	b3669	0.74	-0.9
3,848,603	-	uhpA	b3669	0.75	-0.1
3,848,608	-	uhpA	b3669	0.76	+0.0
3,848,610	-	uhpA	b3669	0.76	-0.4
3,848,719	+				+1.0
3,848,734	+				+0.6
3,848,904	-	ilvN	b3670	0.27	-1.3
3,848,921	+	ilvN	b3670	0.33	-0.3
3,848,950	+	ilvN	b3670	0.43	-0.4
3,848,953	+	ilvN	b3670	0.44	-0.5
3,848,953	+	ilvN	b3670	0.44	-1.2
3,848,958	-	ilvN	b3670	0.46	+0.4
3,848,958	-	ilvN	b3670	0.46	-0.2
3,848,966	+	ilvN	b3670	0.48	-1.3
3,848,978	+	ilvN	b3670	0.53	-2.6
3,848,978	+	ilvN	b3670	0.53	+0.1
3,848,986	-	ilvN	b3670	0.55	-0.5
3,849,000	-	ilvN	b3670	0.60	-0.9
3,849,000	-	ilvN	b3670	0.60	+0.9
3,849,044	-	ilvN	b3670	0.75	-0.4
3,849,044	-	ilvN	b3670	0.75	+0.5
3,849,044	-	ilvN	b3670	0.75	+0.0
3,849,050	+	ilvN	b3670	0.77	-0.8
3,849,050	+	ilvN	b3670	0.77	-1.1
3,849,055	-	ilvN	b3670	0.79	-0.9
3,849,103	-				-0.4
3,849,103	-				+0.3
3,849,110	-				+0.2
3,849,140	-				+0.0
3,849,193	+				-2.1
3,849,391	-	ilvB	b3671	0.16	-2.6
3,849,404	-	ilvB	b3671	0.17	-3.4
3,849,404	-	ilvB	b3671	0.17	-1.8
3,849,467	-	ilvB	b3671	0.21	-2.4
3,849,485	-	ilvB	b3671	0.22	-2.5
3,849,496	-	ilvB	b3671	0.22	-1.8
3,849,517	+	ilvB	b3671	0.24	-2.4
3,849,568	-	ilvB	b3671	0.27	-0.3
3,849,576	+	ilvB	b3671	0.27	-2.7
3,849,578	+	ilvB	b3671	0.27	-2.4
3,849,598	+	ilvB	b3671	0.28	-2.5
3,849,605	+	ilvB	b3671	0.29	-2.6
3,849,615	+	ilvB	b3671	0.29	-1.9
3,849,617	+	ilvB	b3671	0.29	-2.6
3,849,617	+	ilvB	b3671	0.29	-2.3
3,849,626	+	ilvB	b3671	0.30	-1.0
3,849,636	+	ilvB	b3671	0.31	-2.4
3,849,775	-	ilvB	b3671	0.39	-3.4
3,849,828	-	ilvB	b3671	0.42	-0.8
3,849,846	+	ilvB	b3671	0.43	-1.6
3,849,917	+	ilvB	b3671	0.47	-2.1
3,849,917	+	ilvB	b3671	0.47	-3.2
3,850,001	-	ilvB	b3671	0.52	-3.1
3,850,024	-	ilvB	b3671	0.54	-2.2
3,850,027	+	ilvB	b3671	0.54	-1.6
3,850,027	+	ilvB	b3671	0.54	-0.6
3,850,027	+	ilvB	b3671	0.54	-2.3
3,850,142	-	ilvB	b3671	0.61	-1.9
3,850,142	-	ilvB	b3671	0.61	-1.4
3,850,180	+	ilvB	b3671	0.63	-2.0
3,850,187	-	ilvB	b3671	0.63	-2.6
3,850,187	-	ilvB	b3671	0.63	-2.7
3,850,301	+	ilvB	b3671	0.70	-1.6
3,850,301	+	ilvB	b3671	0.70	-1.8
3,850,301	+	ilvB	b3671	0.70	-1.0
3,850,352	+	ilvB	b3671	0.73	-1.9
3,850,358	-	ilvB	b3671	0.73	-1.9
3,850,395	-	ilvB	b3671	0.76	-2.8
3,850,398	+	ilvB	b3671	0.76	-1.7
3,850,408	+	ilvB	b3671	0.76	-1.7
3,850,460	+	ilvB	b3671	0.79	-4.0
3,850,460	-	ilvB	b3671	0.79	-2.0
3,850,498	+	ilvB	b3671	0.82	-1.2
3,850,498	+	ilvB	b3671	0.82	-1.1
3,850,537	+	ilvB	b3671	0.84	-2.6
3,850,556	+	ilvB	b3671	0.85	-2.4
3,850,556	+	ilvB	b3671	0.85	-3.6
3,850,561	+	ilvB	b3671	0.85	-0.8
3,850,561	+	ilvB	b3671	0.85	-0.5
3,850,566	+	ilvB	b3671	0.86	-3.3
3,850,627	+	ilvB	b3671	0.89	-2.1
3,850,635	-	ilvB	b3671	0.90	-3.6
3,850,661	+				-1.7
3,850,674	-				-1.7
3,850,674	-				-1.4
3,850,674	-				-2.4
3,850,674	-				-0.1
3,850,690	+				-3.0
3,850,690	+				-2.2
3,850,698	-				-2.8
3,850,709	+				-3.2
3,850,709	+				-4.6
3,850,775	-				+0.1
3,850,791	+				-2.1
3,850,803	+				-1.4
3,850,805	-				-1.0
3,850,805	-				-2.3
3,850,817	-				-0.1
3,850,898	+				-2.6
3,850,901	-				+0.0
3,850,903	+				-1.1
3,850,903	+				-2.0
3,850,911	+				-1.6
3,850,919	-				+0.4
3,850,919	-				-0.1
3,850,939	-	ivbL	b3672	0.26	-0.4
3,850,965	-	ivbL	b3672	0.53	-1.1
3,850,976	+	ivbL	b3672	0.64	-2.6
3,850,976	+	ivbL	b3672	0.64	-1.3
3,850,996	+	ivbL	b3672	0.84	-1.8
3,850,996	+	ivbL	b3672	0.84	-2.4
3,851,001	+	ivbL	b3672	0.89	-2.2
3,851,001	+	ivbL	b3672	0.89	-2.8
3,851,010	+				-2.7
3,851,010	+				-0.2
3,851,369	+				-1.1
3,851,369	+				-1.2
3,851,379	-				-0.1
3,851,379	-				-0.1
3,851,446	-				-0.0
3,851,446	-				-0.0
3,851,464	-				-0.6
3,851,469	-				+0.9
3,851,469	-				+0.0
3,851,469	-				-0.7
3,851,491	+				+0.4
3,851,493	+				-1.1
3,851,499	-				-0.6
3,851,514	-				+0.2
3,851,545	+				-0.4
3,851,545	+				-0.1
3,851,553	+				+1.0
3,851,592	+	tisB	b4618	0.18	+0.6
3,851,605	+	tisB	b4618	0.32	-0.2
3,851,627	-	tisB	b4618	0.57	-0.0
3,851,644	-	tisB	b4618	0.76	-0.1
3,851,709	+				+0.4
3,851,733	+				-0.1
3,851,733	+				+0.1
3,851,772	-				+0.2