Strain Fitness in Escherichia coli BW25113 around b3181

Experiment: Ying_Nucleobase14 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 2
3,325,749	-				-0.0
3,325,849	+	yhbY	b3180	0.13	-0.1
3,325,849	+				+0.7
3,325,883	-	yhbY	b3180	0.24	-0.1
3,325,908	-	yhbY	b3180	0.33	-0.6
3,325,913	+	yhbY	b3180	0.34	+0.2
3,325,921	-	yhbY	b3180	0.37	-0.8
3,325,928	+	yhbY	b3180	0.39	-0.3
3,325,932	+	yhbY	b3180	0.41	-0.4
3,325,939	+				+0.3
3,325,940	-	yhbY	b3180	0.44	-0.2
3,325,940	-	yhbY	b3180	0.44	-1.1
3,325,976	-	yhbY	b3180	0.56	+0.1
3,326,010	-	yhbY	b3180	0.67	+0.1
3,326,015	-	yhbY	b3180	0.69	+0.2
3,326,015	-	yhbY	b3180	0.69	-0.3
3,326,066	-	yhbY	b3180	0.86	-0.3
3,326,187	-				+0.1
3,326,190	-				+0.2
3,326,197	+				+0.1
3,326,267	-				+0.2
3,326,278	-				+1.8
3,326,278	-				+1.3
3,326,323	+	greA	b3181	0.13	+2.8
3,326,338	-	greA	b3181	0.16	+2.3
3,326,500	-	greA	b3181	0.50	+1.3
3,326,500	-	greA	b3181	0.50	+1.2
3,326,548	+	greA	b3181	0.60	+2.2
3,326,548	+	greA	b3181	0.60	+2.7
3,326,552	+	greA	b3181	0.61	+2.4
3,326,552	+	greA	b3181	0.61	+2.7
3,326,602	-	greA	b3181	0.71	+2.0
3,326,653	+	greA	b3181	0.82	+2.4
3,326,711	+				+3.1
3,326,711	+				+2.5
3,326,719	-				+2.2
3,326,719	-				+2.9
3,326,730	-				+2.0
3,326,738	+				+0.9
3,326,746	-				-0.1
3,326,746	-				+0.5
3,326,772	+				-0.1
3,326,788	+				+0.0
3,326,810	+				+0.3
3,326,810	+				+0.3
3,326,867	+				+0.6
3,326,875	-				-0.6
3,326,899	-				-0.5
3,326,901	+				+0.1
3,326,943	+				-0.3
3,326,980	+				+0.3
3,327,019	+				+0.4
3,327,027	-				-0.6
3,327,030	-				-0.3
3,327,034	+				+0.0
3,327,059	+				+0.4
3,327,064	+				-1.0
3,327,066	+				+0.2
3,327,069	-				+0.1
3,327,088	+				+0.3
3,327,132	+	dacB	b3182	0.10	+0.3
3,327,161	+	dacB	b3182	0.12	+0.8
3,327,161	+	dacB	b3182	0.12	+0.1
3,327,413	-	dacB	b3182	0.30	-0.4
3,327,434	-	dacB	b3182	0.31	-1.6
3,327,494	-	dacB	b3182	0.35	-1.2
3,327,494	-	dacB	b3182	0.35	+0.3
3,327,515	+	dacB	b3182	0.37	-0.3
3,327,523	-	dacB	b3182	0.38	+0.1
3,327,533	-	dacB	b3182	0.38	+0.6
3,327,533	-	dacB	b3182	0.38	+0.7
3,327,574	-	dacB	b3182	0.41	+0.2
3,327,574	-	dacB	b3182	0.41	+0.2
3,327,584	+	dacB	b3182	0.42	-0.3
3,327,597	-	dacB	b3182	0.43	-0.2
3,327,632	-	dacB	b3182	0.45	+0.1
3,327,649	-	dacB	b3182	0.46	-0.3
3,327,649	-	dacB	b3182	0.46	+0.3
3,327,656	-	dacB	b3182	0.47	-0.6
3,327,656	-	dacB	b3182	0.47	-0.8
3,327,697	+	dacB	b3182	0.50	+0.7
3,327,697	+	dacB	b3182	0.50	+0.1
3,327,731	+	dacB	b3182	0.52	-0.7
3,327,731	+	dacB	b3182	0.52	+1.4
3,327,734	-	dacB	b3182	0.52	+1.3