Strain Fitness in Escherichia coli BW25113 around b3026

Experiment: Ying_Nucleobase14 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 2
3,167,512	+	ygiW	b3024	0.52	-1.0
3,167,652	+	ygiW	b3024	0.88	-0.2
3,167,718	-				-0.3
3,167,793	-				-0.6
3,167,793	-				+0.3
3,167,798	+				+0.1
3,167,800	+				+0.1
3,167,800	+				+0.0
3,167,800	+				-0.7
3,167,979	+	qseB	b3025	0.20	-0.2
3,167,987	-	qseB	b3025	0.21	+0.1
3,167,987	-	qseB	b3025	0.21	+0.1
3,168,014	-	qseB	b3025	0.25	+0.3
3,168,014	-	qseB	b3025	0.25	-0.4
3,168,045	+	qseB	b3025	0.30	+0.2
3,168,096	+	qseB	b3025	0.37	+0.3
3,168,108	+	qseB	b3025	0.39	+0.4
3,168,112	+	qseB	b3025	0.40	+0.1
3,168,179	-	qseB	b3025	0.50	+0.0
3,168,192	+	qseB	b3025	0.52	+0.1
3,168,235	+	qseB	b3025	0.58	+0.2
3,168,287	+	qseB	b3025	0.66	+0.6
3,168,288	+	qseB	b3025	0.66	+0.7
3,168,288	+	qseB	b3025	0.66	-0.3
3,168,345	+	qseB	b3025	0.75	-0.2
3,168,357	-	qseB	b3025	0.77	+0.1
3,168,357	-	qseB	b3025	0.77	+0.6
3,168,383	+	qseB	b3025	0.81	-0.2
3,168,388	-	qseB	b3025	0.82	-1.8
3,168,388	-	qseB	b3025	0.82	+0.8
3,168,407	+	qseB	b3025	0.84	-0.1
3,168,485	+				-0.7
3,168,499	-				-0.6
3,168,560	-				+1.1
3,168,678	-	qseC	b3026	0.13	+1.5
3,168,797	+	qseC	b3026	0.22	+0.2
3,168,806	-	qseC	b3026	0.22	+1.5
3,168,824	+	qseC	b3026	0.24	+0.7
3,168,852	+	qseC	b3026	0.26	+2.4
3,168,909	+	qseC	b3026	0.30	-1.6
3,168,943	-	qseC	b3026	0.32	+0.5
3,169,046	+	qseC	b3026	0.40	+0.7
3,169,087	+	qseC	b3026	0.43	+0.0
3,169,161	+	qseC	b3026	0.49	-0.2
3,169,194	+	qseC	b3026	0.51	-0.9
3,169,200	-	qseC	b3026	0.51	+1.6
3,169,246	-	qseC	b3026	0.55	-0.4
3,169,247	-	qseC	b3026	0.55	+0.8
3,169,265	-	qseC	b3026	0.56	-0.5
3,169,341	-	qseC	b3026	0.62	-0.5
3,169,397	+	qseC	b3026	0.66	-0.7
3,169,397	+	qseC	b3026	0.66	+1.2
3,169,419	-	qseC	b3026	0.68	+0.3
3,169,477	+	qseC	b3026	0.72	+1.2
3,169,485	-	qseC	b3026	0.73	+0.1
3,169,521	-	qseC	b3026	0.75	+0.8
3,169,528	-	qseC	b3026	0.76	+0.3
3,169,537	+	qseC	b3026	0.76	+1.2
3,169,620	+	qseC	b3026	0.83	+1.1
3,169,620	+	qseC	b3026	0.83	+0.3
3,169,625	+	qseC	b3026	0.83	+0.3
3,169,625	+	qseC	b3026	0.83	+0.1
3,169,677	+	qseC	b3026	0.87	-0.0
3,169,752	+				+0.2
3,169,752	+				+1.1
3,169,800	+				+0.0
3,169,825	+				-0.5
3,169,825	+				+1.8
3,169,830	+				+0.3
3,169,830	+				+0.9
3,169,840	+				+0.0
3,169,841	+				-0.4
3,169,849	-				+2.3
3,169,863	+				-0.8
3,169,863	+				-0.5
3,169,863	+				-0.1
3,169,863	+				+1.0
3,169,863	+				+0.3
3,169,863	+				-0.1
3,169,863	+				+0.5
3,169,863	+				-0.6
3,169,863	+				+0.4
3,169,871	-				+2.7
3,169,874	+				-0.5
3,169,874	+				+0.1
3,169,888	+				+1.1
3,169,911	+				+0.4
3,169,911	+				+0.4
3,169,912	+				+0.1
3,169,936	+	ygiZ	b3027	0.11	+1.1
3,169,951	+	ygiZ	b3027	0.15	+1.1
3,169,985	+	ygiZ	b3027	0.25	+1.1
3,170,288	-				-0.3
3,170,356	-				+0.4
3,170,390	-				+0.6
3,170,395	-				+1.2
3,170,422	-				+1.3
3,170,422	-				-0.1
3,170,430	-				+0.3
3,170,438	+				-0.9
3,170,438	+				-0.6
3,170,446	-				-0.4
3,170,446	-				-0.2
3,170,521	-				+2.7
3,170,521	-				+0.5
3,170,521	-				+0.0
3,170,521	-				+0.1
3,170,596	+				+0.6
3,170,596	+				-0.1
3,170,601	+				-0.1
3,170,748	-	mdaB	b3028	0.34	+0.4
3,170,748	-	mdaB	b3028	0.34	+0.4
3,170,750	+	mdaB	b3028	0.34	+0.3
3,170,761	+	mdaB	b3028	0.36	-0.7
3,170,781	-	mdaB	b3028	0.39	+0.6
3,170,828	+	mdaB	b3028	0.47	-0.3
3,170,838	-	mdaB	b3028	0.49	+0.4