Strain Fitness in Escherichia coli BW25113 around b2508
Experiment: Ying_Nucleobase14 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Ying_Nucleobase14 rep B; time point 2 |
---|---|---|---|---|---|
remove | |||||
2,630,612 | - | +1.0 | |||
2,632,102 | - | +1.3 | |||
2,632,142 | - | +2.3 | |||
2,632,263 | + | -0.5 | |||
2,632,263 | + | +0.5 | |||
2,632,271 | - | +0.1 | |||
2,632,317 | - | -0.4 | |||
2,632,419 | + | xseA | b2509 | 0.12 | -0.4 |
2,632,419 | + | xseA | b2509 | 0.12 | -0.1 |
2,632,555 | + | xseA | b2509 | 0.22 | +0.7 |
2,632,578 | - | xseA | b2509 | 0.24 | -0.1 |
2,632,658 | + | xseA | b2509 | 0.29 | -0.3 |
2,632,658 | + | xseA | b2509 | 0.29 | -0.2 |
2,632,670 | + | xseA | b2509 | 0.30 | +0.7 |
2,632,670 | + | xseA | b2509 | 0.30 | +0.1 |
2,632,688 | - | xseA | b2509 | 0.32 | +0.2 |
2,632,688 | - | +2.4 | |||
2,632,729 | + | xseA | b2509 | 0.35 | +0.1 |
2,632,729 | + | xseA | b2509 | 0.35 | +0.5 |
2,632,771 | - | xseA | b2509 | 0.38 | +0.5 |
2,632,911 | + | xseA | b2509 | 0.48 | -0.2 |
2,632,969 | + | xseA | b2509 | 0.52 | +0.3 |
2,633,042 | - | xseA | b2509 | 0.57 | +0.8 |
Or see this region's nucleotide sequence