Strain Fitness in Escherichia coli BW25113 around b2101

Experiment: Ying_Nucleobase14 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 2
2,179,214	+				+0.1
2,179,221	-	yegV	b2100	0.11	-0.1
2,179,222	-	yegV	b2100	0.11	-0.5
2,179,310	+	yegV	b2100	0.20	+0.6
2,179,396	-	yegV	b2100	0.29	-0.2
2,179,448	-	yegV	b2100	0.34	+0.1
2,179,906	-	yegV	b2100	0.82	+0.8
2,179,906	-	yegV	b2100	0.82	+0.1
2,179,993	-				+0.1
2,180,103	+				+2.6
2,180,234	+	yegW	b2101	0.24	+2.5
2,180,502	-	yegW	b2101	0.60	+3.2
2,180,515	+	yegW	b2101	0.61	+3.0
2,180,595	-	yegW	b2101	0.72	+2.9
2,180,604	+	yegW	b2101	0.73	+2.5
2,180,604	+	yegW	b2101	0.73	+3.5
2,180,686	-	yegW	b2101	0.84	+2.7
2,180,686	-	yegW	b2101	0.84	+3.1
2,180,686	-	yegW	b2101	0.84	+2.8
2,180,829	+				+2.9
2,180,837	-				-0.1
2,180,886	+				+0.4
2,180,896	-				-0.5
2,180,902	-				-0.4
2,180,902	-				-0.3
2,180,904	-				+0.3
2,180,917	-				+0.1
2,180,934	+				+1.2
2,180,934	+				+0.3
2,180,961	-	yegX	b2102	0.13	+0.4
2,181,005	-				+0.1
2,181,005	-	yegX	b2102	0.18	-0.0
2,181,027	+	yegX	b2102	0.21	-1.6
2,181,027	+	yegX	b2102	0.21	+0.4
2,181,202	-	yegX	b2102	0.42	-0.1
2,181,202	-	yegX	b2102	0.42	-0.3
2,181,221	+	yegX	b2102	0.45	+0.3
2,181,256	-	yegX	b2102	0.49	-0.0
2,181,376	+	yegX	b2102	0.64	+0.5
2,181,460	+	yegX	b2102	0.74	-0.3
2,181,467	+	yegX	b2102	0.75	+0.3
2,181,485	-	yegX	b2102	0.77	-0.1
2,181,497	-	yegX	b2102	0.78	-0.1
2,181,516	-	yegX	b2102	0.81	-0.1
2,181,525	+	yegX	b2102	0.82	+0.3
2,181,548	+	yegX	b2102	0.85	-0.1
2,181,628	+				-0.0
2,181,628	+				-1.0
2,181,631	+				-0.1
2,181,660	+				+0.3
2,181,678	-				+0.2
2,181,695	+				+0.3
2,181,726	+				-0.4
2,181,731	-				+0.2
2,181,749	-				+0.6
2,181,801	-				+0.4