Strain Fitness in Escherichia coli BW25113 around b1341

Experiment: Ying_Nucleobase14 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 2
1,403,720	+	isrA	b4426	0.28	-1.6
1,403,720	+	isrA	b4426	0.28	-0.6
1,403,732	-	isrA	b4426	0.35	-0.1
1,403,735	-	isrA	b4426	0.37	-0.3
1,404,417	-	ydaL	b1340	0.73	+0.5
1,404,648	+				+1.3
1,404,666	-				+0.7
1,404,686	-				+1.3
1,404,900	+	b1341	b1341	0.25	+1.1
1,404,900	+	b1341	b1341	0.25	+1.6
1,404,929	-	b1341	b1341	0.28	+1.1
1,405,161	-	b1341	b1341	0.47	+1.0
1,405,163	+	b1341	b1341	0.47	+1.3
1,405,163	+	b1341	b1341	0.47	+0.8
1,405,166	-	b1341	b1341	0.47	+0.6
1,405,236	+	b1341	b1341	0.53	+0.9
1,405,236	+	b1341	b1341	0.53	+2.2
1,405,293	+	b1341	b1341	0.57	+1.2
1,405,495	+	b1341	b1341	0.74	+0.7
1,405,559	+	b1341	b1341	0.79	+1.0
1,405,665	+	b1341	b1341	0.87	+1.7
1,405,673	-	b1341	b1341	0.88	+1.3
1,405,676	-	b1341	b1341	0.88	+0.7
1,405,755	-				+1.4
1,405,767	+				+0.3
1,405,767	+				+0.5
1,405,776	+				+1.1
1,405,779	-				+1.1
1,405,785	+				+1.3
1,405,798	-				+1.1
1,405,877	+				+1.1
1,405,885	-				+0.0
1,405,885	-				+1.2
1,405,941	-				+0.2
1,405,941	-				-1.5
1,406,243	+	ydaN	b1342	0.17	-0.1
1,406,396	+	ydaN	b1342	0.33	+0.3
1,406,441	+	ydaN	b1342	0.37	+0.4
1,406,441	+	ydaN	b1342	0.37	+0.7
1,406,471	+	ydaN	b1342	0.40	-0.4
1,406,479	-	ydaN	b1342	0.41	+0.9
1,406,521	+	ydaN	b1342	0.45	-0.1
1,406,521	+	ydaN	b1342	0.45	-0.4
1,406,622	+	ydaN	b1342	0.56	-0.1
1,406,678	-	ydaN	b1342	0.61	-0.1
1,406,727	+	ydaN	b1342	0.66	+0.3
1,406,727	+	ydaN	b1342	0.66	+0.2
1,406,783	+	ydaN	b1342	0.72	-0.1
1,406,812	-	ydaN	b1342	0.75	-0.0
1,406,814	-	ydaN	b1342	0.75	+0.9