Experiment: Ying_Nucleobase14 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fepC and fepG overlap by 4 nucleotides fepG and fepD overlap by 4 nucleotides fepD and ybdA are separated by 110 nucleotides
b0588: fepC - iron-enterobactin transporter subunit (NCBI), at 618,607 to 619,422
fepC
b0589: fepG - iron-enterobactin transporter subunit (NCBI), at 619,419 to 620,411
fepG
b0590: fepD - iron-enterobactin transporter subunit (NCBI), at 620,408 to 621,412
fepD
b0591: ybdA - predicted transporter (NCBI), at 621,523 to 622,773
ybdA
Position (kb) 620
621
622 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 619.568 kb on - strand, within fepG at 619.568 kb on - strand, within fepG at 619.680 kb on - strand, within fepG at 619.685 kb on - strand, within fepG at 619.685 kb on - strand, within fepG at 619.750 kb on - strand, within fepG at 619.750 kb on - strand, within fepG at 619.808 kb on + strand, within fepG at 619.812 kb on + strand, within fepG at 619.827 kb on - strand, within fepG at 619.870 kb on - strand, within fepG at 619.872 kb on + strand, within fepG at 619.948 kb on - strand, within fepG at 620.042 kb on - strand, within fepG at 620.050 kb on - strand, within fepG at 620.050 kb on - strand, within fepG at 620.203 kb on - strand, within fepG at 620.205 kb on + strand, within fepG at 620.205 kb on + strand, within fepG at 620.263 kb on - strand, within fepG at 620.336 kb on - strand at 620.392 kb on - strand at 620.482 kb on - strand at 620.514 kb on - strand, within fepD at 620.634 kb on - strand, within fepD at 620.653 kb on - strand, within fepD at 620.653 kb on - strand, within fepD at 620.664 kb on - strand, within fepD at 620.672 kb on - strand, within fepD at 620.728 kb on - strand, within fepD at 620.749 kb on + strand, within fepD at 620.749 kb on + strand, within fepD at 620.749 kb on + strand, within fepD at 620.780 kb on - strand, within fepD at 620.808 kb on + strand, within fepD at 620.808 kb on + strand, within fepD at 620.892 kb on + strand, within fepD at 620.900 kb on - strand, within fepD at 620.964 kb on - strand, within fepD at 620.964 kb on - strand, within fepD at 620.970 kb on + strand, within fepD at 620.970 kb on + strand, within fepD at 621.018 kb on - strand, within fepD at 621.228 kb on - strand, within fepD at 621.295 kb on - strand, within fepD at 621.295 kb on - strand, within fepD at 621.331 kb on + strand at 621.474 kb on - strand at 621.474 kb on - strand at 621.487 kb on - strand at 621.608 kb on + strand at 621.654 kb on - strand, within ybdA at 621.727 kb on - strand, within ybdA at 621.819 kb on + strand, within ybdA at 621.846 kb on + strand, within ybdA at 621.846 kb on + strand, within ybdA at 621.966 kb on + strand, within ybdA at 622.236 kb on + strand, within ybdA at 622.246 kb on + strand, within ybdA at 622.255 kb on - strand, within ybdA at 622.255 kb on - strand, within ybdA at 622.365 kb on + strand, within ybdA at 622.365 kb on + strand, within ybdA at 622.409 kb on - strand, within ybdA
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 2 remove 619,568 - fepG b0589 0.15 -3.1 619,568 - fepG b0589 0.15 -1.8 619,680 - fepG b0589 0.26 -3.1 619,685 - fepG b0589 0.27 -0.0 619,685 - fepG b0589 0.27 -4.8 619,750 - fepG b0589 0.33 -2.6 619,750 - fepG b0589 0.33 -2.5 619,808 + fepG b0589 0.39 -3.4 619,812 + fepG b0589 0.40 -2.4 619,827 - fepG b0589 0.41 -1.5 619,870 - fepG b0589 0.45 -4.1 619,872 + fepG b0589 0.46 -0.8 619,948 - fepG b0589 0.53 -2.1 620,042 - fepG b0589 0.63 -2.5 620,050 - fepG b0589 0.64 -3.8 620,050 - fepG b0589 0.64 -1.7 620,203 - fepG b0589 0.79 -1.7 620,205 + fepG b0589 0.79 -2.2 620,205 + fepG b0589 0.79 -2.9 620,263 - fepG b0589 0.85 -3.1 620,336 - -3.9 620,392 - -0.9 620,482 - -1.9 620,514 - fepD b0590 0.11 -1.1 620,634 - fepD b0590 0.22 -2.3 620,653 - fepD b0590 0.24 -3.8 620,653 - fepD b0590 0.24 -2.7 620,664 - fepD b0590 0.25 -2.7 620,672 - fepD b0590 0.26 -5.1 620,728 - fepD b0590 0.32 -1.5 620,749 + fepD b0590 0.34 -1.1 620,749 + fepD b0590 0.34 -4.3 620,749 + fepD b0590 0.34 -2.1 620,780 - fepD b0590 0.37 -3.1 620,808 + fepD b0590 0.40 -2.5 620,808 + fepD b0590 0.40 -4.6 620,892 + fepD b0590 0.48 -2.8 620,900 - fepD b0590 0.49 -4.2 620,964 - fepD b0590 0.55 -4.2 620,964 - fepD b0590 0.55 -2.6 620,970 + fepD b0590 0.56 -3.0 620,970 + fepD b0590 0.56 -4.9 621,018 - fepD b0590 0.61 -2.6 621,228 - fepD b0590 0.82 -3.1 621,295 - fepD b0590 0.88 -2.3 621,295 - fepD b0590 0.88 -3.6 621,331 + -2.2 621,474 - -0.6 621,474 - +0.8 621,487 - -0.1 621,608 + -0.2 621,654 - ybdA b0591 0.10 +1.0 621,727 - ybdA b0591 0.16 +0.0 621,819 + ybdA b0591 0.24 -0.2 621,846 + ybdA b0591 0.26 +1.3 621,846 + ybdA b0591 0.26 +0.6 621,966 + ybdA b0591 0.35 +1.0 622,236 + ybdA b0591 0.57 +0.5 622,246 + ybdA b0591 0.58 -0.5 622,255 - ybdA b0591 0.59 -0.4 622,255 - ybdA b0591 0.59 +0.1 622,365 + ybdA b0591 0.67 +0.4 622,365 + ybdA b0591 0.67 +0.1 622,409 - ybdA b0591 0.71 -0.6
Or see this region's nucleotide sequence