Strain Fitness in Escherichia coli BW25113 around b0003

Experiment: Ying_Nucleobase14 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 2
1,868	+	thrA	b0002	0.62	-4.5
1,868	+	thrA	b0002	0.62	-3.9
1,871	+	thrA	b0002	0.62	-4.7
1,876	-	thrA	b0002	0.62	-3.7
1,881	-	thrA	b0002	0.63	-5.0
1,881	-	thrA	b0002	0.63	-2.0
1,929	+	thrA	b0002	0.65	-5.7
1,929	+	thrA	b0002	0.65	-5.0
1,937	-	thrA	b0002	0.65	-2.1
1,937	-	thrA	b0002	0.65	-1.3
2,076	+	thrA	b0002	0.71	-4.7
2,104	+	thrA	b0002	0.72	-2.7
2,104	+	thrA	b0002	0.72	-4.4
2,266	-	thrA	b0002	0.78	-3.6
2,266	-	thrA	b0002	0.78	-4.1
2,292	-	thrA	b0002	0.79	-4.9
2,294	+	thrA	b0002	0.79	-4.6
2,370	-	thrA	b0002	0.83	-2.6
2,370	-	thrA	b0002	0.83	-3.0
2,449	-	thrA	b0002	0.86	-4.1
2,590	-				-3.5
2,675	+				-3.4
2,682	+				-3.1
2,682	+				-0.3
2,684	+				-3.7
2,717	+				-4.2
2,744	-				-4.8
2,787	-				-2.5
2,787	-				-3.4
2,829	+				-5.5
2,847	+				-3.7
2,847	+				-3.3
2,906	-	thrB	b0003	0.11	-3.5
2,934	+	thrB	b0003	0.14	-6.4
2,963	-	thrB	b0003	0.17	-4.0
3,020	-	thrB	b0003	0.23	+1.0
3,023	+	thrB	b0003	0.24	-4.5
3,131	+	thrB	b0003	0.35	-6.7
3,144	-	thrB	b0003	0.37	-4.2
3,186	+	thrB	b0003	0.41	-5.6
3,246	+	thrB	b0003	0.48	-3.8
3,248	+	thrB	b0003	0.48	-6.0
3,256	+	thrB	b0003	0.49	-5.8
3,293	+	thrB	b0003	0.53	-3.4
3,301	-	thrB	b0003	0.54	-3.4
3,318	-	thrB	b0003	0.55	-5.9
3,411	+	thrB	b0003	0.65	-4.7
3,444	-	thrB	b0003	0.69	-4.6
3,444	-	thrB	b0003	0.69	-2.5
3,504	-	thrB	b0003	0.75	-5.9
3,504	-	thrB	b0003	0.75	-3.8
3,509	-	thrB	b0003	0.76	-6.4
3,511	+	thrB	b0003	0.76	-4.5
3,607	+	thrB	b0003	0.86	-4.7
3,634	-	thrB	b0003	0.89	-3.7
3,638	+	thrB	b0003	0.90	-5.5
3,638	+	thrB	b0003	0.90	-3.3
3,650	+				-3.7
3,769	+				-3.6
3,769	+				-4.0
3,792	-				-3.2
3,805	-				-3.9
3,953	-	thrC	b0004	0.17	-4.0
3,953	-	thrC	b0004	0.17	-4.9
4,108	-	thrC	b0004	0.29	-5.5
4,174	-	thrC	b0004	0.34	-4.7
4,180	+	thrC	b0004	0.35	-4.2
4,180	+	thrC	b0004	0.35	-4.1
4,216	+	thrC	b0004	0.37	-5.4
4,253	-	thrC	b0004	0.40	-4.0
4,253	-	thrC	b0004	0.40	-3.5
4,464	-	thrC	b0004	0.57	-3.7
4,466	+	thrC	b0004	0.57	-4.6
4,619	+	thrC	b0004	0.69	-4.6
4,721	+	thrC	b0004	0.77	-4.6
4,729	+	thrC	b0004	0.77	-4.4
4,729	-	thrC	b0004	0.77	-5.8
4,729	-	thrC	b0004	0.77	-4.1