Strain Fitness in Escherichia coli BW25113 around b4190

Experiment: Ying_Nucleobase14 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 2
4,414,039	+				+0.5
4,414,039	+				-0.0
4,414,049	-				-0.7
4,414,049	-				-0.6
4,414,051	+				-1.8
4,414,136	+	yjfN	b4188	0.35	+0.2
4,414,136	+	yjfN	b4188	0.35	+0.6
4,414,142	-	yjfN	b4188	0.37	+0.5
4,414,142	-	yjfN	b4188	0.37	+0.1
4,414,160	+	yjfN	b4188	0.43	+0.6
4,414,181	-	yjfN	b4188	0.51	+0.0
4,414,206	-	yjfN	b4188	0.60	+1.4
4,414,226	-	yjfN	b4188	0.67	-0.5
4,414,226	-	yjfN	b4188	0.67	+0.2
4,414,230	+	yjfN	b4188	0.69	+0.7
4,414,252	+	yjfN	b4188	0.77	+0.6
4,414,254	+	yjfN	b4188	0.78	-0.4
4,414,257	-	yjfN	b4188	0.79	-1.0
4,414,257	-	yjfN	b4188	0.79	+0.3
4,414,345	+				+0.1
4,414,355	+				+0.4
4,414,356	+				-0.1
4,414,368	+				-0.0
4,414,368	+				+0.1
4,414,374	-				+0.6
4,414,374	-				-0.2
4,414,377	-				+0.3
4,414,377	-				-0.5
4,414,392	+				-0.5
4,414,394	+				-1.3
4,414,394	+				-0.2
4,414,409	+				-0.5
4,414,409	+				-0.5
4,414,409	+				-0.9
4,414,410	-				+0.3
4,414,415	-				-0.0
4,414,422	-				+0.2
4,414,424	+				+0.2
4,414,424	+				+0.1
4,414,431	+				-0.8
4,414,431	+				-0.5
4,414,434	+				-0.6
4,414,434	+				-0.0
4,414,442	-				-0.5
4,414,448	+				+0.1
4,414,448	+				+0.5
4,414,456	-				-0.1
4,414,499	+	yjfO	b4189	0.11	+0.2
4,414,523	-	yjfO	b4189	0.18	-0.0
4,414,599	+	yjfO	b4189	0.41	+0.1
4,414,599	+	yjfO	b4189	0.41	-0.1
4,414,613	+	yjfO	b4189	0.45	+0.3
4,414,617	-	yjfO	b4189	0.46	+0.1
4,414,621	-	yjfO	b4189	0.48	-0.1
4,414,621	-	yjfO	b4189	0.48	+0.4
4,414,621	-	yjfO	b4189	0.48	+0.1
4,414,651	-	yjfO	b4189	0.57	-0.5
4,414,682	-	yjfO	b4189	0.66	-0.2
4,414,682	-	yjfO	b4189	0.66	+0.2
4,414,704	+	yjfO	b4189	0.73	-0.0
4,414,705	-	yjfO	b4189	0.73	+0.9
4,414,716	+	yjfO	b4189	0.76	+0.4
4,414,722	-	yjfO	b4189	0.78	+0.5
4,414,746	-	yjfO	b4189	0.85	+0.1
4,414,791	-				+0.1
4,414,791	-				-0.1
4,414,795	+				-0.1
4,414,800	-				-0.3
4,414,800	-				+1.2
4,414,825	-				-0.5
4,414,838	-				-0.2
4,414,838	-				+0.5
4,414,885	+				-0.1
4,414,899	+				+0.2
4,414,899	+				-1.3
4,415,030	-				+1.5
4,415,030	-				+0.7
4,415,050	-	yjfP	b4190	0.10	+1.4
4,415,058	-	yjfP	b4190	0.11	+1.4
4,415,058	-	yjfP	b4190	0.11	+1.3
4,415,058	-	yjfP	b4190	0.11	+1.0
4,415,086	-	yjfP	b4190	0.15	+0.6
4,415,103	-	yjfP	b4190	0.17	+0.7
4,415,171	+	yjfP	b4190	0.26	+0.1
4,415,171	+	yjfP	b4190	0.26	+0.5
4,415,370	+	yjfP	b4190	0.53	+0.4
4,415,370	+	yjfP	b4190	0.53	+1.3
4,415,399	+	yjfP	b4190	0.57	+0.8
4,415,399	+	yjfP	b4190	0.57	+0.6
4,415,526	-	yjfP	b4190	0.73	+0.4
4,415,562	-	yjfP	b4190	0.78	+0.2
4,415,590	-	yjfP	b4190	0.82	+0.5
4,415,620	+	yjfP	b4190	0.86	+0.8
4,415,620	+	yjfP	b4190	0.86	+0.8
4,415,632	+	yjfP	b4190	0.88	+0.5
4,415,632	+	yjfP	b4190	0.88	+1.5
4,415,657	-				+1.4
4,415,724	-				+0.6
4,415,724	-				+0.0
4,415,767	-				+0.0
4,415,767	-				-1.5
4,415,820	+	ulaR	b4191	0.13	-1.7
4,415,879	+	ulaR	b4191	0.21	-0.7
4,415,879	+	ulaR	b4191	0.21	-2.2
4,415,879	-	ulaR	b4191	0.21	-0.6
4,416,008	+	ulaR	b4191	0.38	-2.4
4,416,037	+	ulaR	b4191	0.42	-1.4
4,416,040	-	ulaR	b4191	0.42	-1.5
4,416,050	-	ulaR	b4191	0.44	-1.1
4,416,178	-	ulaR	b4191	0.60	+0.8
4,416,291	+	ulaR	b4191	0.75	-1.9
4,416,291	+	ulaR	b4191	0.75	-0.9
4,416,291	+	ulaR	b4191	0.75	-0.9
4,416,459	+				-1.5
4,416,555	+				+0.1
4,416,555	+				+0.3
4,416,568	-				-0.3
4,416,590	-				-0.3
4,416,639	-				-0.1
4,416,646	+				-0.2
4,416,653	-				-0.4
4,416,660	+				+0.4
4,416,660	+				+0.2