Strain Fitness in Escherichia coli BW25113 around b4016

Experiment: Ying_Nucleobase14 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 2
4,215,702	+	aceA	b4015	0.44	-0.1
4,215,736	-	aceA	b4015	0.46	+0.0
4,215,759	+	aceA	b4015	0.48	+0.4
4,215,813	+	aceA	b4015	0.52	+0.0
4,215,878	-	aceA	b4015	0.57	-0.1
4,215,878	-	aceA	b4015	0.57	-0.5
4,215,941	-	aceA	b4015	0.62	+0.1
4,215,965	+	aceA	b4015	0.64	+0.1
4,215,989	-	aceA	b4015	0.66	+0.0
4,215,989	-	aceA	b4015	0.66	-0.4
4,216,035	+	aceA	b4015	0.69	-0.1
4,216,074	+	aceA	b4015	0.72	+0.3
4,216,074	+	aceA	b4015	0.72	-0.9
4,216,082	-	aceA	b4015	0.73	+0.3
4,216,194	+	aceA	b4015	0.81	-1.6
4,216,291	-	aceA	b4015	0.89	+1.0
4,216,350	-				+0.4
4,216,350	-				-0.2
4,216,414	-				+0.0
4,216,465	-				-0.1
4,216,506	-				-0.0
4,216,506	-				-0.1
4,216,564	+				-0.1
4,216,564	+				+0.0
4,216,600	+				-0.5
4,216,701	+				-0.1
4,216,727	-				-0.0
4,216,774	+				-1.1
4,216,790	-				-0.6
4,216,858	-	aceK	b4016	0.14	+0.2
4,216,875	+	aceK	b4016	0.15	-0.0
4,216,909	-	aceK	b4016	0.17	-0.0
4,216,909	-	aceK	b4016	0.17	-0.4
4,217,001	-	aceK	b4016	0.22	+0.2
4,217,011	+	aceK	b4016	0.23	+0.2
4,217,030	-	aceK	b4016	0.24	-0.4
4,217,067	-	aceK	b4016	0.26	+0.3
4,217,067	-	aceK	b4016	0.26	+0.1
4,217,182	-	aceK	b4016	0.32	-0.1
4,217,417	-	aceK	b4016	0.46	-1.1
4,217,417	-	aceK	b4016	0.46	+0.1
4,217,538	+	aceK	b4016	0.53	-0.1
4,217,561	-	aceK	b4016	0.54	+0.0
4,217,670	+	aceK	b4016	0.61	-0.1
4,217,936	-	aceK	b4016	0.76	-0.5
4,217,938	-	aceK	b4016	0.76	+0.1
4,217,974	+	aceK	b4016	0.78	+0.1
4,217,974	+	aceK	b4016	0.78	-0.2
4,217,995	+	aceK	b4016	0.79	-0.0
4,218,097	+	aceK	b4016	0.85	+0.2
4,218,097	+	aceK	b4016	0.85	+0.1
4,218,110	-	aceK	b4016	0.86	+0.0
4,218,110	-	aceK	b4016	0.86	-0.5
4,218,131	+	aceK	b4016	0.87	+0.4
4,218,131	+	aceK	b4016	0.87	-0.3
4,218,196	+				-0.1
4,218,211	+				-0.2
4,218,211	+				-0.3
4,218,243	-				-0.2
4,218,243	-				+0.4
4,218,245	+				-0.1
4,218,245	+				+0.4
4,218,245	+				-0.6
4,218,253	-				+0.9
4,218,258	+				-0.1
4,218,258	+				-0.3
4,218,268	-				+0.1
4,218,275	+				-0.4
4,218,275	-				-0.8
4,218,312	-				-0.2
4,218,312	-				+0.2
4,218,315	+				+0.5
4,218,315	+				+0.7
4,218,315	+				+0.3
4,218,315	+				-0.3
4,218,322	+				+0.1
4,218,326	+				-0.0
4,218,326	+				-0.4
4,218,333	+				-0.9
4,218,333	+				-0.0
4,218,334	+				-0.4
4,218,341	-				+0.9
4,218,342	-				+0.2
4,218,382	+				+0.5
4,218,389	+				-1.1
4,218,389	+				+0.7
4,218,394	+				-0.0
4,218,394	+				-0.5
4,218,398	+				-0.2
4,218,398	+				+0.7
4,218,414	+				-2.0
4,218,414	+				+0.3
4,218,560	+	arpA	b4017	0.11	+0.9
4,218,560	+	arpA	b4017	0.11	+0.2
4,218,560	+	arpA	b4017	0.11	-0.5
4,218,560	+	arpA	b4017	0.11	-0.6
4,218,560	+	arpA	b4017	0.11	+1.0
4,218,568	-	arpA	b4017	0.11	+1.6
4,218,569	+	arpA	b4017	0.11	-0.4
4,218,640	+	arpA	b4017	0.14	+0.8
4,218,640	+	arpA	b4017	0.14	-0.2
4,218,777	-	arpA	b4017	0.21	+1.6
4,218,777	-	arpA	b4017	0.21	+1.3
4,218,777	-	arpA	b4017	0.21	-0.1
4,218,789	-	arpA	b4017	0.21	+0.6
4,218,794	-	arpA	b4017	0.21	+2.8
4,218,901	-	arpA	b4017	0.26	+2.6
4,218,976	-	arpA	b4017	0.30	+2.6