Strain Fitness in Escherichia coli BW25113 around b3617

Experiment: Ying_Nucleobase14 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 2
3,788,378	-				+0.3
3,788,378	-				+0.5
3,788,378	-				+0.2
3,788,383	-				+0.4
3,788,383	-				+1.4
3,788,389	-				+0.6
3,788,389	-				+0.5
3,788,392	-				-0.0
3,788,397	-				+0.3
3,788,398	-				-0.5
3,788,398	-				+0.1
3,788,399	-				+0.7
3,788,427	-				+0.1
3,788,427	-				-0.1
3,788,471	+	tdh	b3616	0.12	-1.1
3,788,471	+	tdh	b3616	0.12	+1.1
3,788,506	-	tdh	b3616	0.16	+0.6
3,788,561	+	tdh	b3616	0.21	+0.3
3,788,569	-	tdh	b3616	0.22	+0.3
3,788,580	+	tdh	b3616	0.23	+0.3
3,788,586	-	tdh	b3616	0.24	+0.5
3,788,609	-	tdh	b3616	0.26	+0.5
3,788,624	-	tdh	b3616	0.27	-0.1
3,788,652	-	tdh	b3616	0.30	+0.4
3,788,681	-	tdh	b3616	0.33	-0.5
3,788,693	-	tdh	b3616	0.34	-1.4
3,788,725	+	tdh	b3616	0.37	+1.3
3,788,761	+	tdh	b3616	0.41	-0.0
3,788,794	+	tdh	b3616	0.44	+2.6
3,788,813	+	tdh	b3616	0.46	+0.2
3,788,914	+	tdh	b3616	0.56	+0.5
3,788,974	+	tdh	b3616	0.62	+0.3
3,789,042	-	tdh	b3616	0.68	-0.2
3,789,086	+	tdh	b3616	0.72	-0.0
3,789,086	+	tdh	b3616	0.72	+1.6
3,789,149	+	tdh	b3616	0.79	-0.0
3,789,149	+	tdh	b3616	0.79	-0.2
3,789,164	+	tdh	b3616	0.80	+0.7
3,789,228	-	tdh	b3616	0.86	-0.6
3,789,229	+	tdh	b3616	0.86	+0.5
3,789,229	+	tdh	b3616	0.86	-0.3
3,789,238	-	tdh	b3616	0.87	+0.0
3,789,250	+	tdh	b3616	0.88	+1.5
3,789,263	-	tdh	b3616	0.90	+0.6
3,789,290	+				-0.3
3,789,300	-				+0.4
3,789,345	+				+0.3
3,789,374	-				+0.6
3,789,447	+				-0.3
3,789,447	+				-0.0
3,789,510	-	kbl	b3617	0.11	-0.0
3,789,565	+	kbl	b3617	0.16	-0.5
3,789,582	-	kbl	b3617	0.17	+0.7
3,789,590	+	kbl	b3617	0.18	+1.7
3,789,607	+	kbl	b3617	0.19	+1.3
3,789,607	+	kbl	b3617	0.19	+0.9
3,789,607	+	kbl	b3617	0.19	+0.2
3,789,675	+	kbl	b3617	0.25	+0.2
3,789,715	-	kbl	b3617	0.28	+0.8
3,789,836	-	kbl	b3617	0.38	-0.7
3,789,883	-	kbl	b3617	0.42	+1.3
3,789,903	+	kbl	b3617	0.44	+0.7
3,789,903	+	kbl	b3617	0.44	+1.0
3,789,944	+	kbl	b3617	0.47	+1.0
3,789,949	+	kbl	b3617	0.48	+0.8
3,789,950	-	kbl	b3617	0.48	+1.1
3,789,950	-	kbl	b3617	0.48	+0.3
3,789,952	-	kbl	b3617	0.48	+0.7
3,789,952	-	kbl	b3617	0.48	+0.9
3,789,991	+	kbl	b3617	0.51	+0.9
3,789,991	+	kbl	b3617	0.51	+1.3
3,790,023	+	kbl	b3617	0.54	-0.4
3,790,133	-	kbl	b3617	0.63	+0.3
3,790,150	-	kbl	b3617	0.64	+0.2
3,790,178	-	kbl	b3617	0.67	+0.2
3,790,236	-	kbl	b3617	0.72	+0.4
3,790,257	-	kbl	b3617	0.73	+1.2
3,790,257	-	kbl	b3617	0.73	+1.4
3,790,274	-	kbl	b3617	0.75	-0.2
3,790,274	-	kbl	b3617	0.75	-0.2
3,790,304	+	kbl	b3617	0.77	-0.3
3,790,314	+	kbl	b3617	0.78	-0.8
3,790,314	+	kbl	b3617	0.78	+0.0
3,790,327	+	kbl	b3617	0.79	-0.1
3,790,328	+	kbl	b3617	0.79	+0.8
3,790,357	-	kbl	b3617	0.82	+0.5
3,790,357	-	kbl	b3617	0.82	+0.2
3,790,402	-	kbl	b3617	0.86	+0.7
3,790,402	-	kbl	b3617	0.86	+0.2
3,790,456	-				+0.9
3,790,459	+				-0.3
3,790,460	-				+0.9
3,790,460	-				+0.1
3,790,463	+				-0.1
3,790,463	-				-0.0
3,790,471	-				+1.1
3,790,473	+				-0.3
3,790,486	-				+1.0
3,790,486	-				+1.1
3,790,531	+				+1.2
3,790,531	+				+0.1
3,790,531	+				+0.4
3,790,531	+				-0.1
3,790,539	-				+0.4
3,790,539	-				+0.2
3,790,539	-				+0.4
3,790,539	-				+0.2
3,790,539	-				+0.9
3,790,539	-				+0.8
3,790,559	-				+0.1
3,790,581	+				-1.4
3,790,581	+				+0.1
3,790,581	+				+0.7
3,790,581	+				-0.0
3,790,582	+				+0.3
3,790,588	+				-1.3
3,790,589	-				+0.7
3,790,589	-				+0.6
3,790,617	+				+0.1
3,790,617	+				+2.3
3,790,625	-				+1.8
3,790,625	-				+1.8
3,790,641	+				+0.1
3,790,643	+				+0.7
3,790,643	-				+1.8
3,790,643	-				+1.8
3,790,691	-				+3.5
3,790,698	+				+0.2
3,790,698	-				+2.6
3,790,698	-				+3.3
3,790,807	+				+0.6
3,790,812	+				+0.6
3,790,824	-				+0.8
3,790,840	-				+0.3
3,790,844	-				-0.2
3,790,890	+				+0.1
3,790,898	+				-0.9
3,790,898	+				+0.4
3,790,903	+				+0.4
3,790,904	+				-0.0
3,790,906	-				+0.2
3,790,906	-				+0.3
3,790,912	-				+0.4
3,790,913	-				+0.2
3,790,920	-				-1.0
3,790,920	-				+0.6
3,790,945	-	htrL	b3618	0.11	+0.1
3,790,950	+	htrL	b3618	0.12	-0.1
3,790,950	+	htrL	b3618	0.12	+0.2
3,790,954	-	htrL	b3618	0.12	-0.0
3,790,954	-	htrL	b3618	0.12	+0.3
3,790,955	+	htrL	b3618	0.12	+0.2
3,790,955	+	htrL	b3618	0.12	-0.0
3,790,955	+	htrL	b3618	0.12	+0.3
3,790,957	+	htrL	b3618	0.13	-0.6
3,790,957	+	htrL	b3618	0.13	+0.2
3,790,959	-	htrL	b3618	0.13	+0.0
3,790,960	+	htrL	b3618	0.13	+0.0
3,790,960	+	htrL	b3618	0.13	-0.3
3,790,963	-	htrL	b3618	0.13	-0.4
3,790,963	-	htrL	b3618	0.13	-0.4
3,790,963	-	htrL	b3618	0.13	-0.1
3,790,965	-	htrL	b3618	0.14	+0.7
3,790,968	-	htrL	b3618	0.14	-0.1
3,790,968	-	htrL	b3618	0.14	+1.5
3,790,984	-	htrL	b3618	0.16	-0.1
3,790,987	+	htrL	b3618	0.16	+0.2
3,790,992	-	htrL	b3618	0.17	-0.2
3,790,992	-	htrL	b3618	0.17	+0.3
3,791,016	-	htrL	b3618	0.19	-0.0
3,791,016	-	htrL	b3618	0.19	+0.7
3,791,156	-	htrL	b3618	0.36	+0.1
3,791,156	-	htrL	b3618	0.36	+0.8
3,791,164	-	htrL	b3618	0.37	+0.6
3,791,183	-	htrL	b3618	0.39	+0.5
3,791,191	-	htrL	b3618	0.40	-1.4
3,791,191	-	htrL	b3618	0.40	-0.7
3,791,193	-	htrL	b3618	0.40	+0.2
3,791,203	-	htrL	b3618	0.41	-0.1
3,791,246	-	htrL	b3618	0.46	+0.6
3,791,247	-	htrL	b3618	0.46	+2.6
3,791,270	-	htrL	b3618	0.49	+1.8
3,791,271	-	htrL	b3618	0.49	-0.5
3,791,304	-	htrL	b3618	0.53	+1.0
3,791,304	-	htrL	b3618	0.53	+2.6
3,791,304	-	htrL	b3618	0.53	+2.1
3,791,316	-	htrL	b3618	0.54	+2.6
3,791,316	-	htrL	b3618	0.54	+1.0
3,791,347	-	htrL	b3618	0.58	-0.3
3,791,359	-	htrL	b3618	0.59	+0.2
3,791,360	-	htrL	b3618	0.60	+2.6
3,791,361	-	htrL	b3618	0.60	-0.4
3,791,361	-	htrL	b3618	0.60	+0.6
3,791,361	-	htrL	b3618	0.60	-0.2
3,791,361	-	htrL	b3618	0.60	+1.2
3,791,361	-	htrL	b3618	0.60	+1.6
3,791,361	-	htrL	b3618	0.60	+0.6
3,791,419	-	htrL	b3618	0.66	+0.2
3,791,571	-	htrL	b3618	0.84	+1.6
3,791,571	-	htrL	b3618	0.84	+4.1