Strain Fitness in Escherichia coli BW25113 around b1108

Experiment: Ying_Nucleobase14 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 2
1,163,576	+	nagZ	b1107	0.25	+0.1
1,163,576	+	nagZ	b1107	0.25	-0.5
1,163,630	-	nagZ	b1107	0.30	-0.7
1,163,687	+	nagZ	b1107	0.36	-0.5
1,163,695	-	nagZ	b1107	0.37	-0.1
1,163,695	-	nagZ	b1107	0.37	-0.3
1,163,772	+	nagZ	b1107	0.44	+0.1
1,163,819	-	nagZ	b1107	0.49	-0.3
1,163,831	-	nagZ	b1107	0.50	+0.3
1,163,831	-	nagZ	b1107	0.50	+0.3
1,163,855	-	nagZ	b1107	0.52	+1.8
1,163,949	-	nagZ	b1107	0.62	-0.2
1,163,949	-	nagZ	b1107	0.62	-1.4
1,164,356	-				+0.9
1,164,707	-	ycfP	b1108	0.63	+0.0
1,164,715	-	ycfP	b1108	0.64	+0.4
1,164,715	-	ycfP	b1108	0.64	+1.1
1,164,925	+				-0.1
1,164,925	+				-2.4
1,164,943	+				+0.1
1,165,028	-				-0.3
1,165,028	-				+0.0
1,165,364	-				-0.1
1,165,364	-				-0.1
1,165,374	-				-0.3
1,165,602	-	ndh	b1109	0.23	-0.4
1,165,602	-	ndh	b1109	0.23	-1.2
1,165,673	+	ndh	b1109	0.28	-0.2
1,165,904	+	ndh	b1109	0.46	-0.0
1,165,904	+	ndh	b1109	0.46	-0.3