Experiment: Ying_Nucleobase14 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tig and clpP are separated by 245 nucleotides clpP and clpX are separated by 125 nucleotides
b0436: tig - trigger factor (NCBI), at 454,357 to 455,655
tig
b0437: clpP - ATP-dependent Clp protease proteolytic subunit (NCBI), at 455,901 to 456,524
clpP
b0438: clpX - ATP-dependent protease ATP-binding subunit (NCBI), at 456,650 to 457,924
clpX
Position (kb) 455
456
457 Strain fitness (log2 ratio) -1
0
1
2 at 454.924 kb on + strand, within tig at 454.924 kb on + strand, within tig at 454.932 kb on - strand, within tig at 455.024 kb on + strand, within tig at 455.024 kb on + strand, within tig at 455.089 kb on - strand, within tig at 455.089 kb on - strand, within tig at 455.128 kb on + strand, within tig at 455.128 kb on + strand, within tig at 455.128 kb on + strand, within tig at 455.217 kb on + strand, within tig at 455.314 kb on - strand, within tig at 455.314 kb on - strand, within tig at 455.439 kb on + strand, within tig at 455.467 kb on + strand, within tig at 455.563 kb on - strand at 455.563 kb on - strand at 455.812 kb on - strand at 455.824 kb on - strand at 455.827 kb on - strand at 455.852 kb on + strand at 455.852 kb on + strand at 455.921 kb on + strand at 455.958 kb on - strand at 456.018 kb on - strand, within clpP at 456.053 kb on - strand, within clpP at 456.141 kb on + strand, within clpP at 456.142 kb on - strand, within clpP at 456.162 kb on + strand, within clpP at 456.162 kb on - strand, within clpP at 456.162 kb on - strand, within clpP at 456.168 kb on + strand, within clpP at 456.170 kb on + strand, within clpP at 456.217 kb on - strand, within clpP at 456.220 kb on - strand, within clpP at 456.222 kb on - strand, within clpP at 456.222 kb on - strand, within clpP at 456.320 kb on - strand, within clpP at 456.327 kb on - strand, within clpP at 456.345 kb on + strand, within clpP at 456.383 kb on - strand, within clpP at 456.396 kb on + strand, within clpP at 456.422 kb on - strand, within clpP at 456.429 kb on - strand, within clpP at 456.429 kb on - strand, within clpP at 456.429 kb on - strand, within clpP at 456.429 kb on - strand, within clpP at 456.439 kb on - strand, within clpP at 456.480 kb on + strand at 456.504 kb on + strand at 456.541 kb on + strand at 456.610 kb on + strand at 456.749 kb on + strand at 456.749 kb on + strand at 456.757 kb on - strand at 456.918 kb on + strand, within clpX at 456.931 kb on - strand, within clpX at 456.954 kb on - strand, within clpX at 456.954 kb on - strand, within clpX at 457.003 kb on - strand, within clpX at 457.054 kb on + strand, within clpX at 457.112 kb on + strand, within clpX at 457.112 kb on + strand, within clpX at 457.120 kb on - strand, within clpX at 457.188 kb on - strand, within clpX at 457.188 kb on - strand, within clpX at 457.197 kb on - strand, within clpX at 457.238 kb on + strand, within clpX at 457.262 kb on - strand, within clpX at 457.272 kb on + strand, within clpX at 457.360 kb on + strand, within clpX at 457.360 kb on + strand, within clpX at 457.379 kb on - strand, within clpX at 457.510 kb on + strand, within clpX
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2 remove 454,924 + tig b0436 0.44 +0.7 454,924 + tig b0436 0.44 +0.5 454,932 - tig b0436 0.44 -0.4 455,024 + tig b0436 0.51 +0.1 455,024 + tig b0436 0.51 +0.4 455,089 - tig b0436 0.56 +0.8 455,089 - tig b0436 0.56 -0.5 455,128 + tig b0436 0.59 +0.5 455,128 + tig b0436 0.59 +0.7 455,128 + tig b0436 0.59 +0.6 455,217 + tig b0436 0.66 +0.2 455,314 - tig b0436 0.74 +1.3 455,314 - tig b0436 0.74 +0.5 455,439 + tig b0436 0.83 -0.1 455,467 + tig b0436 0.85 -0.2 455,563 - +0.8 455,563 - -0.4 455,812 - +0.7 455,824 - +0.2 455,827 - +0.3 455,852 + -0.3 455,852 + -0.4 455,921 + +0.7 455,958 - +0.9 456,018 - clpP b0437 0.19 +1.3 456,053 - clpP b0437 0.24 +0.5 456,141 + clpP b0437 0.38 +0.4 456,142 - clpP b0437 0.39 +0.6 456,162 + clpP b0437 0.42 +1.3 456,162 - clpP b0437 0.42 +1.2 456,162 - clpP b0437 0.42 -0.3 456,168 + clpP b0437 0.43 +0.9 456,170 + clpP b0437 0.43 +0.7 456,217 - clpP b0437 0.51 +2.1 456,220 - clpP b0437 0.51 +0.9 456,222 - clpP b0437 0.51 +1.9 456,222 - clpP b0437 0.51 +1.6 456,320 - clpP b0437 0.67 +1.0 456,327 - clpP b0437 0.68 +1.4 456,345 + clpP b0437 0.71 +0.3 456,383 - clpP b0437 0.77 +1.5 456,396 + clpP b0437 0.79 +0.7 456,422 - clpP b0437 0.83 +1.1 456,429 - clpP b0437 0.85 +2.0 456,429 - clpP b0437 0.85 +0.8 456,429 - clpP b0437 0.85 +1.2 456,429 - clpP b0437 0.85 +1.3 456,439 - clpP b0437 0.86 +2.2 456,480 + +0.7 456,504 + +0.2 456,541 + +0.2 456,610 + +0.1 456,749 + +0.5 456,749 + +0.9 456,757 - +1.2 456,918 + clpX b0438 0.21 +0.2 456,931 - clpX b0438 0.22 +1.9 456,954 - clpX b0438 0.24 +1.1 456,954 - clpX b0438 0.24 +2.4 457,003 - clpX b0438 0.28 +1.0 457,054 + clpX b0438 0.32 +0.8 457,112 + clpX b0438 0.36 +1.3 457,112 + clpX b0438 0.36 +1.1 457,120 - clpX b0438 0.37 +1.4 457,188 - clpX b0438 0.42 +2.2 457,188 - clpX b0438 0.42 +1.2 457,197 - clpX b0438 0.43 +1.9 457,238 + clpX b0438 0.46 +0.5 457,262 - clpX b0438 0.48 +0.8 457,272 + clpX b0438 0.49 +1.0 457,360 + clpX b0438 0.56 +1.3 457,360 + clpX b0438 0.56 +1.5 457,379 - clpX b0438 0.57 -0.0 457,510 + clpX b0438 0.67 +0.5
Or see this region's nucleotide sequence