Strain Fitness in Escherichia coli BW25113 around b2478

Experiment: Ying_sugar7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 2
2,595,937	+				+0.6
2,595,937	+				+0.0
2,595,944	-				+0.1
2,595,944	-				+0.8
2,595,991	+	nlpB	b2477	0.13	-0.5
2,595,991	+	nlpB	b2477	0.13	+0.4
2,596,206	+	nlpB	b2477	0.34	-0.5
2,596,295	-	nlpB	b2477	0.43	-0.9
2,596,349	-	nlpB	b2477	0.48	-0.1
2,596,439	-	nlpB	b2477	0.57	-0.1
2,596,441	+	nlpB	b2477	0.57	-0.4
2,596,792	+				+0.1
2,596,792	+				+0.3
2,596,883	-				-0.0
2,596,883	-				+0.3
2,597,909	+				-0.2
2,597,917	-				-5.2
2,597,917	-				-4.8
2,597,962	-				-4.0
2,597,988	-	gcvR	b2479	0.10	-4.1
2,598,033	+	gcvR	b2479	0.18	-3.0
2,598,054	+	gcvR	b2479	0.22	-3.2
2,598,128	-	gcvR	b2479	0.35	-1.7
2,598,129	-	gcvR	b2479	0.35	-2.0
2,598,129	-	gcvR	b2479	0.35	-1.9
2,598,132	+	gcvR	b2479	0.36	-4.3
2,598,132	+	gcvR	b2479	0.36	-2.4
2,598,139	-	gcvR	b2479	0.37	-3.8
2,598,142	+	gcvR	b2479	0.37	-2.0
2,598,212	+	gcvR	b2479	0.50	-2.4
2,598,282	+	gcvR	b2479	0.62	-4.2
2,598,285	+	gcvR	b2479	0.62	-3.1
2,598,303	-	gcvR	b2479	0.65	-2.6
2,598,303	-	gcvR	b2479	0.65	-3.1
2,598,346	-	gcvR	b2479	0.73	-4.2
2,598,400	-	gcvR	b2479	0.82	-4.5
2,598,400	-	gcvR	b2479	0.82	-3.0
2,598,418	-	gcvR	b2479	0.86	-2.3
2,598,427	-	gcvR	b2479	0.87	-5.6
2,598,513	+				+0.9
2,598,621	+	bcp	b2480	0.26	+0.9
2,598,621	+	bcp	b2480	0.26	+0.8
2,598,628	-	bcp	b2480	0.27	-0.7
2,598,639	-	bcp	b2480	0.30	-0.5
2,598,644	-	bcp	b2480	0.31	-0.2
2,598,714	-	bcp	b2480	0.45	-0.1
2,598,757	+	bcp	b2480	0.55	+0.0