Experiment: Ying_OrganicAcid7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fecR and fecI overlap by 4 nucleotides fecI and insA-7 are separated by 291 nucleotides insA-7 and insB-7 overlap by 82 nucleotides
b4292: fecR - KpLE2 phage-like element; transmembrane signal transducer for ferric citrate transport (NCBI), at 4,514,787 to 4,515,740
fecR
b4293: fecI - KpLE2 phage-like element; RNA polymerase, sigma 19 factor (NCBI), at 4,515,737 to 4,516,258
fecI
b4294: insA-7 - KpLE2 phage-like element; IS1 repressor protein InsA (NCBI), at 4,516,550 to 4,516,825
insA-7
b4576: insB-7 - no description, at 4,516,744 to 4,517,247
insB-7
Position (kb) 4515
4516
4517 Strain fitness (log2 ratio) -1
0
1
2
3 at 4514.740 kb on - strand at 4514.962 kb on - strand, within fecR at 4515.006 kb on - strand, within fecR at 4515.017 kb on + strand, within fecR at 4515.044 kb on + strand, within fecR at 4515.059 kb on - strand, within fecR at 4515.152 kb on - strand, within fecR at 4515.299 kb on - strand, within fecR at 4515.303 kb on + strand, within fecR at 4515.311 kb on - strand, within fecR at 4515.504 kb on - strand, within fecR at 4515.504 kb on - strand, within fecR at 4515.522 kb on + strand, within fecR at 4515.546 kb on + strand, within fecR at 4515.584 kb on - strand, within fecR at 4515.609 kb on - strand, within fecR at 4515.647 kb on + strand at 4515.669 kb on + strand at 4515.669 kb on + strand at 4515.702 kb on - strand at 4515.749 kb on + strand at 4515.756 kb on - strand at 4515.760 kb on + strand at 4515.770 kb on + strand at 4515.852 kb on - strand, within fecI at 4515.928 kb on - strand, within fecI at 4515.928 kb on - strand, within fecI at 4515.997 kb on + strand, within fecI at 4516.053 kb on + strand, within fecI at 4516.053 kb on + strand, within fecI at 4516.059 kb on + strand, within fecI at 4516.059 kb on + strand, within fecI at 4516.067 kb on - strand, within fecI at 4516.067 kb on - strand, within fecI at 4516.111 kb on - strand, within fecI at 4516.116 kb on - strand, within fecI at 4516.135 kb on - strand, within fecI at 4516.377 kb on + strand at 4516.417 kb on + strand at 4516.430 kb on + strand at 4516.456 kb on + strand at 4516.515 kb on + strand at 4516.515 kb on + strand at 4516.686 kb on - strand, within insA-7 at 4516.686 kb on - strand, within insA-7 at 4516.884 kb on + strand, within insB-7 at 4516.946 kb on + strand, within insB-7 at 4516.959 kb on - strand, within insB-7 at 4516.983 kb on + strand, within insB-7 at 4516.983 kb on + strand, within insB-7 at 4517.038 kb on - strand, within insB-7 at 4517.038 kb on - strand, within insB-7 at 4517.064 kb on - strand, within insB-7 at 4517.088 kb on + strand, within insB-7 at 4517.100 kb on + strand, within insB-7 at 4517.108 kb on - strand, within insB-7 at 4517.146 kb on + strand, within insB-7 at 4517.146 kb on + strand, within insB-7
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 2 remove 4,514,740 - +0.3 4,514,962 - fecR b4292 0.18 -1.0 4,515,006 - fecR b4292 0.23 +0.3 4,515,017 + fecR b4292 0.24 +0.2 4,515,044 + fecR b4292 0.27 -0.2 4,515,059 - fecR b4292 0.29 +0.3 4,515,152 - fecR b4292 0.38 +0.0 4,515,299 - fecR b4292 0.54 -0.2 4,515,303 + fecR b4292 0.54 -0.4 4,515,311 - fecR b4292 0.55 +0.2 4,515,504 - fecR b4292 0.75 -0.7 4,515,504 - fecR b4292 0.75 -0.3 4,515,522 + fecR b4292 0.77 +0.1 4,515,546 + fecR b4292 0.80 +0.0 4,515,584 - fecR b4292 0.84 +0.1 4,515,609 - fecR b4292 0.86 -0.4 4,515,647 + +0.3 4,515,669 + +0.4 4,515,669 + -1.3 4,515,702 - -0.4 4,515,749 + +0.1 4,515,756 - -0.1 4,515,760 + -1.2 4,515,770 + -0.9 4,515,852 - fecI b4293 0.22 +0.8 4,515,928 - fecI b4293 0.37 +0.6 4,515,928 - fecI b4293 0.37 +0.0 4,515,997 + fecI b4293 0.50 +0.9 4,516,053 + fecI b4293 0.61 +3.3 4,516,053 + fecI b4293 0.61 +2.9 4,516,059 + fecI b4293 0.62 +0.2 4,516,059 + fecI b4293 0.62 +0.3 4,516,067 - fecI b4293 0.63 -0.0 4,516,067 - fecI b4293 0.63 -0.1 4,516,111 - fecI b4293 0.72 +0.4 4,516,116 - fecI b4293 0.73 +0.1 4,516,135 - fecI b4293 0.76 -0.0 4,516,377 + +0.2 4,516,417 + -0.6 4,516,430 + +0.3 4,516,456 + -0.1 4,516,515 + +0.0 4,516,515 + -0.2 4,516,686 - insA-7 b4294 0.49 +0.5 4,516,686 - insA-7 b4294 0.49 -0.0 4,516,884 + insB-7 b4576 0.28 -0.3 4,516,946 + insB-7 b4576 0.40 +0.2 4,516,959 - insB-7 b4576 0.43 -0.4 4,516,983 + insB-7 b4576 0.47 -0.3 4,516,983 + insB-7 b4576 0.47 +0.6 4,517,038 - insB-7 b4576 0.58 +0.2 4,517,038 - insB-7 b4576 0.58 +0.1 4,517,064 - insB-7 b4576 0.63 -0.5 4,517,088 + insB-7 b4576 0.68 +0.7 4,517,100 + insB-7 b4576 0.71 +0.3 4,517,108 - insB-7 b4576 0.72 +0.0 4,517,146 + insB-7 b4576 0.80 +0.5 4,517,146 + insB-7 b4576 0.80 -0.0
Or see this region's nucleotide sequence