Strain Fitness in Escherichia coli BW25113 around b3454

Experiment: Ying_OrganicAcid7 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 2
3,589,777	+	ugpB	b3453	0.57	+0.6
3,589,777	+	ugpB	b3453	0.57	+0.3
3,589,998	-	ugpB	b3453	0.73	-0.2
3,589,998	-	ugpB	b3453	0.73	+0.4
3,590,230	+				+1.4
3,590,271	+				+1.0
3,590,305	+				-0.0
3,590,319	+				+0.0
3,590,390	+				+0.1
3,590,403	+				+0.6
3,590,411	-				+0.9
3,590,450	+				+0.5
3,590,459	+				-0.7
3,590,655	+				+0.1
3,590,659	-				-0.5
3,590,659	-				+0.8
3,590,703	-				-1.1
3,590,774	-				+0.6
3,590,810	-				+0.1
3,590,898	-	livF	b3454	0.21	+1.2
3,590,898	-	livF	b3454	0.21	+0.2
3,590,903	-	livF	b3454	0.22	+0.1
3,590,966	-	livF	b3454	0.31	+0.3
3,590,966	-	livF	b3454	0.31	+0.3
3,590,988	+	livF	b3454	0.34	+0.7
3,591,059	-	livF	b3454	0.44	+0.9
3,591,061	+	livF	b3454	0.44	+1.1
3,591,090	-	livF	b3454	0.48	+0.4
3,591,125	-	livF	b3454	0.53	+4.9
3,591,164	+	livF	b3454	0.58	+1.0
3,591,164	+	livF	b3454	0.58	+0.4
3,591,172	-	livF	b3454	0.60	+0.4
3,591,197	+	livF	b3454	0.63	+0.4
3,591,252	+	livF	b3454	0.71	+1.0
3,591,252	+	livF	b3454	0.71	+0.8
3,591,381	-	livF	b3454	0.89	-0.6
3,591,381	-	livF	b3454	0.89	-0.2
3,591,419	-				+0.1
3,591,479	-				+0.2
3,591,479	-				+0.6
3,591,547	-	livG	b3455	0.11	+0.3
3,591,584	+	livG	b3455	0.16	+1.4
3,591,592	-	livG	b3455	0.17	+1.0
3,591,748	-	livG	b3455	0.37	-0.0
3,591,748	-	livG	b3455	0.37	+0.1
3,591,748	-	livG	b3455	0.37	+0.0
3,591,765	+	livG	b3455	0.39	+0.1
3,591,768	-	livG	b3455	0.40	+0.6
3,591,834	+	livG	b3455	0.48	-0.0
3,591,834	+	livG	b3455	0.48	+0.6
3,591,881	+	livG	b3455	0.55	+2.2
3,591,907	+	livG	b3455	0.58	-0.5
3,591,937	-	livG	b3455	0.62	+0.6
3,591,943	-	livG	b3455	0.63	+0.1
3,591,962	-	livG	b3455	0.65	+0.2
3,591,974	-	livG	b3455	0.67	+0.6
3,592,053	+	livG	b3455	0.77	+0.2
3,592,148	-	livG	b3455	0.89	-0.0
3,592,229	+				-0.3
3,592,321	-				+0.0
3,592,436	+	livM	b3456	0.16	+0.3
3,592,436	+	livM	b3456	0.16	+1.2