Experiment: Ying_OrganicAcid7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ylbI and ylbG are separated by 2 nucleotides ylbG and ybbB are separated by 115 nucleotides ybbB and ybbS are separated by 68 nucleotides
b4632: ylbI - no description, at 528,724 to 528,816
ylbI
b0502: ylbG - no description, at 528,819 to 529,240
ylbG
b0503: ybbB - tRNA 2-selenouridine synthase, selenophosphate-dependent (NCBI), at 529,356 to 530,450
ybbB
b0504: ybbS - DNA-binding transcriptional activator of the allD operon (NCBI), at 530,519 to 531,445
ybbS
Position (kb) 529
530
531 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 528.377 kb on - strand at 528.384 kb on + strand at 528.446 kb on + strand at 528.454 kb on + strand at 528.502 kb on + strand at 528.502 kb on + strand at 528.512 kb on + strand at 528.750 kb on - strand, within ylbI at 528.757 kb on + strand, within ylbI at 528.757 kb on + strand, within ylbI at 528.759 kb on + strand, within ylbI at 528.765 kb on - strand, within ylbI at 528.765 kb on - strand, within ylbI at 528.765 kb on - strand, within ylbI at 528.765 kb on - strand, within ylbI at 528.765 kb on - strand, within ylbI at 528.767 kb on - strand, within ylbI at 528.770 kb on - strand, within ylbI at 528.770 kb on - strand, within ylbI at 528.770 kb on - strand, within ylbI at 528.777 kb on + strand, within ylbI at 528.777 kb on + strand, within ylbI at 528.786 kb on - strand, within ylbI at 528.786 kb on - strand, within ylbI at 528.786 kb on - strand, within ylbI at 528.786 kb on - strand, within ylbI at 528.793 kb on - strand, within ylbI at 528.799 kb on - strand, within ylbI at 528.803 kb on - strand, within ylbI at 528.803 kb on - strand, within ylbI at 528.834 kb on - strand at 528.834 kb on - strand at 528.880 kb on + strand, within ylbG at 528.897 kb on - strand, within ylbG at 528.897 kb on - strand, within ylbG at 528.969 kb on + strand, within ylbG at 529.243 kb on + strand at 529.243 kb on + strand at 529.243 kb on + strand at 529.249 kb on - strand at 529.269 kb on + strand at 529.312 kb on - strand at 529.437 kb on - strand at 529.728 kb on - strand, within ybbB at 529.728 kb on - strand, within ybbB at 529.906 kb on - strand, within ybbB at 529.911 kb on + strand, within ybbB at 529.911 kb on + strand, within ybbB at 529.959 kb on + strand, within ybbB at 529.959 kb on + strand, within ybbB at 530.005 kb on - strand, within ybbB at 530.209 kb on + strand, within ybbB at 530.583 kb on - strand at 530.583 kb on - strand at 531.058 kb on - strand, within ybbS at 531.077 kb on - strand, within ybbS at 531.113 kb on + strand, within ybbS at 531.134 kb on - strand, within ybbS at 531.229 kb on + strand, within ybbS
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 2 remove 528,377 - +1.4 528,384 + +0.1 528,446 + -0.2 528,454 + +2.4 528,502 + +2.4 528,502 + +2.4 528,512 + +2.4 528,750 - ylbI b4632 0.28 -0.2 528,757 + ylbI b4632 0.35 -0.6 528,757 + ylbI b4632 0.35 -0.2 528,759 + ylbI b4632 0.38 +2.4 528,765 - ylbI b4632 0.44 +1.2 528,765 - ylbI b4632 0.44 +0.3 528,765 - ylbI b4632 0.44 -0.4 528,765 - ylbI b4632 0.44 -0.6 528,765 - ylbI b4632 0.44 -0.4 528,767 - ylbI b4632 0.46 -0.2 528,770 - ylbI b4632 0.49 +0.2 528,770 - ylbI b4632 0.49 -0.1 528,770 - ylbI b4632 0.49 -0.5 528,777 + ylbI b4632 0.57 -0.1 528,777 + ylbI b4632 0.57 +1.1 528,786 - ylbI b4632 0.67 +0.1 528,786 - ylbI b4632 0.67 -0.3 528,786 - ylbI b4632 0.67 -0.8 528,786 - ylbI b4632 0.67 -0.4 528,793 - ylbI b4632 0.74 +0.4 528,799 - ylbI b4632 0.81 +0.1 528,803 - ylbI b4632 0.85 -0.5 528,803 - ylbI b4632 0.85 +0.1 528,834 - +0.5 528,834 - -1.3 528,880 + ylbG b0502 0.14 -0.5 528,897 - ylbG b0502 0.18 +0.3 528,897 - ylbG b0502 0.18 -0.3 528,969 + ylbG b0502 0.36 +0.1 529,243 + +0.2 529,243 + -0.8 529,243 + +0.2 529,249 - -0.6 529,269 + +1.2 529,312 - -0.4 529,437 - +0.4 529,728 - ybbB b0503 0.34 +0.3 529,728 - ybbB b0503 0.34 +0.7 529,906 - ybbB b0503 0.50 +0.3 529,911 + ybbB b0503 0.51 +1.1 529,911 + ybbB b0503 0.51 +0.7 529,959 + ybbB b0503 0.55 -0.1 529,959 + ybbB b0503 0.55 -0.4 530,005 - ybbB b0503 0.59 +4.0 530,209 + ybbB b0503 0.78 -0.1 530,583 - +0.6 530,583 - -0.4 531,058 - ybbS b0504 0.58 +0.7 531,077 - ybbS b0504 0.60 -0.0 531,113 + ybbS b0504 0.64 +0.4 531,134 - ybbS b0504 0.66 -0.2 531,229 + ybbS b0504 0.77 -0.7
Or see this region's nucleotide sequence