Strain Fitness in Escherichia coli BW25113 around b0078

Experiment: Ying_OrganicAcid7 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 2
86,357	+	ilvI	b0077	0.42	-3.8
86,357	+	ilvI	b0077	0.42	-3.2
86,366	-	ilvI	b0077	0.43	-3.8
86,367	+	ilvI	b0077	0.43	-5.6
86,438	+	ilvI	b0077	0.47	-1.2
86,447	-	ilvI	b0077	0.47	-2.1
86,447	-	ilvI	b0077	0.47	-2.6
86,508	+	ilvI	b0077	0.51	-4.3
86,517	+	ilvI	b0077	0.51	-4.7
86,535	-	ilvI	b0077	0.52	-4.6
86,535	-	ilvI	b0077	0.52	-4.8
86,548	-	ilvI	b0077	0.53	-5.6
86,593	-	ilvI	b0077	0.56	-4.6
86,602	+	ilvI	b0077	0.56	-4.0
86,602	+	ilvI	b0077	0.56	-4.2
86,797	+	ilvI	b0077	0.68	-4.7
86,841	+	ilvI	b0077	0.70	-3.1
86,894	-	ilvI	b0077	0.73	-3.3
86,899	+	ilvI	b0077	0.74	-4.5
87,001	-	ilvI	b0077	0.79	-6.2
87,026	+	ilvI	b0077	0.81	-2.2
87,034	-	ilvI	b0077	0.81	-3.2
87,062	-	ilvI	b0077	0.83	-5.0
87,070	+	ilvI	b0077	0.83	-5.0
87,070	+	ilvI	b0077	0.83	-3.5
87,092	-	ilvI	b0077	0.85	-4.7
87,098	-	ilvI	b0077	0.85	-2.5
87,098	-	ilvI	b0077	0.85	-4.7
87,130	+	ilvI	b0077	0.87	-5.1
87,165	-	ilvI	b0077	0.89	-5.8
87,166	-	ilvI	b0077	0.89	-2.4
87,250	+				-3.8
87,285	+				-2.3
87,443	-	ilvH	b0078	0.17	-1.4
87,480	+	ilvH	b0078	0.25	-5.1
87,497	+	ilvH	b0078	0.28	-6.3
87,571	+	ilvH	b0078	0.43	-4.1
87,571	+	ilvH	b0078	0.43	-4.3
87,588	-	ilvH	b0078	0.47	-3.5
87,617	-	ilvH	b0078	0.53	-3.1
87,617	-	ilvH	b0078	0.53	-2.7
87,640	+	ilvH	b0078	0.58	-5.7
87,665	-	ilvH	b0078	0.63	+0.2
87,698	-	ilvH	b0078	0.69	-2.5
87,705	+	ilvH	b0078	0.71	-4.1
87,710	+	ilvH	b0078	0.72	-4.3
87,710	+	ilvH	b0078	0.72	-3.5
87,718	-	ilvH	b0078	0.73	-5.6
87,718	-	ilvH	b0078	0.73	-4.2
87,718	-	ilvH	b0078	0.73	-3.6
87,718	-	ilvH	b0078	0.73	-3.7
87,740	-	ilvH	b0078	0.78	-5.6
87,744	-	ilvH	b0078	0.79	-4.0
87,785	+	ilvH	b0078	0.87	-5.2
87,802	+				-4.8
87,815	-				-4.2
87,918	-				-1.4
87,951	-				-2.9
87,955	+				-0.3
88,009	+				-0.7
88,074	+				-6.1
88,085	+				-1.4
88,111	-				-1.9
88,111	-				-1.7
88,111	-				-2.1
88,111	-				-2.1
88,113	-				-4.7
88,187	+	fruR	b0080	0.16	-2.8
88,187	+	fruR	b0080	0.16	-3.0
88,259	-	fruR	b0080	0.23	-4.2
88,265	+	fruR	b0080	0.24	-3.6
88,365	+	fruR	b0080	0.34	-3.9
88,365	+	fruR	b0080	0.34	-3.6
88,432	+	fruR	b0080	0.40	-2.7
88,432	+	fruR	b0080	0.40	-2.5
88,471	-	fruR	b0080	0.44	-3.2
88,482	+	fruR	b0080	0.45	-3.7
88,490	-	fruR	b0080	0.46	-2.0
88,492	+	fruR	b0080	0.46	-1.6
88,492	+	fruR	b0080	0.46	-1.8
88,492	+	fruR	b0080	0.46	-4.3
88,500	-	fruR	b0080	0.47	-3.7
88,517	-	fruR	b0080	0.49	-2.1
88,517	-	fruR	b0080	0.49	-3.0
88,683	+	fruR	b0080	0.65	-3.2
88,753	+	fruR	b0080	0.72	-4.8
88,772	+				+0.3
88,774	+	fruR	b0080	0.74	-3.3
88,821	+	fruR	b0080	0.79	-3.9