Strain Fitness in Escherichia coli BW25113 around b1703
Experiment: Ying_OrganicAcid7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Ying_OrganicAcid7 rep A; time point 2 |
---|---|---|---|---|---|
remove | |||||
1,784,472 | - | pps | b1702 | 0.72 | -1.4 |
1,784,598 | + | pps | b1702 | 0.77 | -1.4 |
1,784,610 | + | pps | b1702 | 0.78 | -1.5 |
1,784,832 | + | pps | b1702 | 0.87 | -3.3 |
1,784,832 | + | pps | b1702 | 0.87 | -2.6 |
1,784,954 | + | -1.7 | |||
1,785,015 | + | -0.9 | |||
1,785,056 | + | -1.9 | |||
1,785,076 | + | -2.3 | |||
1,785,101 | + | -1.9 | |||
1,785,101 | + | -0.4 | |||
1,785,111 | + | +0.2 | |||
1,785,268 | + | +1.7 | |||
1,785,268 | + | -1.9 | |||
1,785,399 | - | +1.4 | |||
1,785,739 | + | ydiA | b1703 | 0.32 | -0.6 |
1,785,765 | + | ydiA | b1703 | 0.35 | -0.5 |
1,785,814 | - | ydiA | b1703 | 0.41 | -0.6 |
1,785,826 | - | ydiA | b1703 | 0.43 | +1.4 |
1,785,827 | - | ydiA | b1703 | 0.43 | +0.7 |
1,785,827 | - | ydiA | b1703 | 0.43 | +0.6 |
1,785,918 | + | ydiA | b1703 | 0.54 | +0.1 |
1,785,918 | + | ydiA | b1703 | 0.54 | +0.7 |
1,786,154 | + | ydiA | b1703 | 0.82 | +0.4 |
1,786,164 | + | ydiA | b1703 | 0.83 | +0.5 |
1,786,192 | + | ydiA | b1703 | 0.87 | +0.2 |
1,786,224 | + | +0.7 | |||
1,786,412 | + | +0.2 | |||
1,786,464 | - | +0.6 | |||
1,786,530 | - | +0.5 | |||
1,786,532 | + | +0.4 | |||
1,786,532 | + | -0.2 | |||
1,786,543 | - | -0.0 | |||
1,786,543 | - | -0.0 | |||
1,786,553 | - | -0.0 | |||
1,786,553 | - | -0.7 | |||
1,786,632 | + | aroH | b1704 | 0.17 | +0.6 |
1,786,668 | - | aroH | b1704 | 0.20 | -1.5 |
1,786,668 | - | aroH | b1704 | 0.20 | -0.8 |
1,786,722 | + | aroH | b1704 | 0.25 | +0.4 |
1,786,897 | - | aroH | b1704 | 0.42 | -0.0 |
1,787,055 | - | aroH | b1704 | 0.57 | -0.5 |
1,787,210 | - | aroH | b1704 | 0.72 | -1.0 |
1,787,217 | - | aroH | b1704 | 0.72 | -0.2 |
Or see this region's nucleotide sequence