Strain Fitness in Escherichia coli BW25113 around b1191

Experiment: Ying_AminoAcid20 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 2
1,238,803	+	dadX	b1190	0.65	-1.8
1,238,803	+	dadX	b1190	0.65	-1.3
1,238,855	+	dadX	b1190	0.70	-1.9
1,238,874	-	dadX	b1190	0.72	-0.3
1,238,920	-	dadX	b1190	0.76	-1.3
1,238,920	-	dadX	b1190	0.76	+0.7
1,239,281	-				-0.4
1,239,422	-				+0.2
1,239,639	-				+0.6
1,239,674	+				+1.1
1,239,674	+				+0.7
1,239,690	-				+0.8
1,239,769	+	b1191	b1191	0.12	+0.7
1,239,842	+	b1191	b1191	0.16	+1.0
1,239,886	+	b1191	b1191	0.19	+1.7
1,239,886	+	b1191	b1191	0.19	+0.7
1,239,977	+	b1191	b1191	0.24	+0.3
1,240,277	-	b1191	b1191	0.41	+0.5
1,240,277	-	b1191	b1191	0.41	+0.9
1,240,277	-	b1191	b1191	0.41	+0.2
1,240,352	+	b1191	b1191	0.46	+0.9
1,240,364	+				+0.7
1,240,364	+	b1191	b1191	0.46	+0.2
1,240,372	-	b1191	b1191	0.47	+0.3
1,240,372	-	b1191	b1191	0.47	+0.1
1,240,433	+	b1191	b1191	0.50	+0.6
1,240,506	+	b1191	b1191	0.55	+0.8
1,240,552	-	b1191	b1191	0.57	+0.7
1,240,627	-	b1191	b1191	0.62	+0.9
1,240,675	-	b1191	b1191	0.64	+0.6
1,240,750	-	b1191	b1191	0.69	+1.4
1,240,974	+	b1191	b1191	0.82	-0.0
1,240,995	-	b1191	b1191	0.83	+1.1
1,240,997	-	b1191	b1191	0.83	+0.1
1,241,032	-	b1191	b1191	0.85	+0.7
1,241,068	+	b1191	b1191	0.87	+0.9
1,241,102	-	b1191	b1191	0.89	+0.9
1,241,102	-	b1191	b1191	0.89	+1.2
1,241,112	+	b1191	b1191	0.89	+0.8
1,241,143	-				+0.4
1,241,159	-				+1.0
1,241,159	-				+0.5
1,241,231	+				+1.2
1,241,231	+				+0.6
1,241,331	+				+0.8
1,241,331	+				+0.6
1,241,424	+				-2.5
1,241,425	-				-3.5
1,241,433	+				-5.1
1,241,501	+	ldcA	b1192	0.12	-6.3
1,241,572	-	ldcA	b1192	0.20	-4.3
1,241,581	+	ldcA	b1192	0.21	-3.3
1,241,747	+	ldcA	b1192	0.39	-0.9
1,241,936	-	ldcA	b1192	0.60	-4.6
1,241,936	-	ldcA	b1192	0.60	-5.4
1,241,961	-	ldcA	b1192	0.63	-4.2
1,241,961	-	ldcA	b1192	0.63	-4.1
1,241,999	-	ldcA	b1192	0.67	-3.3
1,242,033	+	ldcA	b1192	0.70	-4.5
1,242,208	-	ldcA	b1192	0.90	-2.7
1,242,237	-				-3.9
1,242,284	+				-2.7