Strain Fitness in Escherichia coli BW25113 around b4141

Experiment: Ying_AminoAcid20 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 2
4,366,200	-	aspA	b4139	0.89	-2.1
4,366,202	-	aspA	b4139	0.90	-3.8
4,366,302	-				-3.0
4,366,302	-				-1.7
4,366,313	-				-3.0
4,366,432	+				-1.7
4,366,462	-				-0.7
4,366,462	-				+0.4
4,366,464	-				+0.2
4,366,472	-				+0.3
4,366,510	-				+0.1
4,366,510	-				-0.5
4,366,623	-				+0.4
4,366,623	-				-0.2
4,366,650	+				-0.1
4,366,770	-	b4140	b4140	0.17	-0.9
4,366,773	+	b4140	b4140	0.18	-0.2
4,366,777	-	b4140	b4140	0.19	-0.1
4,366,777	-	b4140	b4140	0.19	+0.1
4,366,784	-	b4140	b4140	0.20	-1.0
4,366,784	-	b4140	b4140	0.20	-0.8
4,366,794	-	b4140	b4140	0.22	-0.8
4,366,794	-	b4140	b4140	0.22	-0.6
4,366,820	+	b4140	b4140	0.28	-0.3
4,366,822	+	b4140	b4140	0.28	+0.0
4,366,822	-	b4140	b4140	0.28	-0.1
4,366,827	-	b4140	b4140	0.29	-0.0
4,366,829	-	b4140	b4140	0.30	-0.2
4,366,831	+	b4140	b4140	0.30	-0.3
4,366,834	-	b4140	b4140	0.31	+1.1
4,366,973	+	b4140	b4140	0.60	-0.3
4,366,973	+	b4140	b4140	0.60	+0.1
4,366,980	+	b4140	b4140	0.61	-0.3
4,366,980	+	b4140	b4140	0.61	+0.2
4,366,987	-	b4140	b4140	0.63	-0.5
4,366,996	+	b4140	b4140	0.65	-0.0
4,367,098	+	b4140	b4140	0.86	-0.2
4,367,098	+	b4140	b4140	0.86	+0.9
4,367,101	+	b4140	b4140	0.87	-1.1
4,367,158	+				-1.1
4,367,158	+				-0.0
4,367,189	-				-0.2
4,367,235	-				+0.2
4,367,235	-				+0.4
4,367,287	-				+1.0
4,367,287	-				-0.0
4,367,291	+				+1.1
4,367,294	+				+0.4
4,367,321	+	yjeH	b4141	0.11	+0.4
4,367,432	+				+0.1
4,367,451	+	yjeH	b4141	0.22	+0.4
4,367,454	+	yjeH	b4141	0.22	-0.5
4,367,454	+	yjeH	b4141	0.22	-0.2
4,367,464	+	yjeH	b4141	0.23	+0.2
4,367,472	-	yjeH	b4141	0.23	-0.4
4,367,472	-	yjeH	b4141	0.23	+0.1
4,367,472	-	yjeH	b4141	0.23	-0.5
4,367,529	-	yjeH	b4141	0.28	-0.6
4,367,539	-	yjeH	b4141	0.29	-0.2
4,367,557	-	yjeH	b4141	0.30	-0.1
4,367,562	-	yjeH	b4141	0.30	-0.8
4,367,582	-	yjeH	b4141	0.32	-0.3
4,367,582	-	yjeH	b4141	0.32	+0.2
4,367,582	-	yjeH	b4141	0.32	-0.3
4,367,619	-	yjeH	b4141	0.35	+0.1
4,367,619	-	yjeH	b4141	0.35	-0.4
4,367,619	-	yjeH	b4141	0.35	+0.1
4,367,635	-	yjeH	b4141	0.36	-0.3
4,367,635	-	yjeH	b4141	0.36	+0.1
4,367,645	-	yjeH	b4141	0.37	-0.1
4,367,645	-	yjeH	b4141	0.37	+1.1
4,367,645	-	yjeH	b4141	0.37	-0.1
4,367,721	-	yjeH	b4141	0.43	-0.6
4,367,721	-	yjeH	b4141	0.43	+0.1
4,367,721	-	yjeH	b4141	0.43	-0.3
4,367,721	-	yjeH	b4141	0.43	-1.0
4,367,721	-	yjeH	b4141	0.43	+0.2
4,367,738	-	yjeH	b4141	0.44	+0.8
4,367,751	-	yjeH	b4141	0.46	-0.8
4,367,825	+	yjeH	b4141	0.51	-0.5
4,367,883	-	yjeH	b4141	0.56	+0.1
4,367,883	-	yjeH	b4141	0.56	-0.1
4,367,935	-	yjeH	b4141	0.60	+0.6
4,367,976	+	yjeH	b4141	0.63	-0.1
4,367,982	-	yjeH	b4141	0.64	-1.1
4,368,005	+	yjeH	b4141	0.66	-0.9
4,368,024	+	yjeH	b4141	0.67	+0.1
4,368,026	+	yjeH	b4141	0.67	+0.0
4,368,026	+	yjeH	b4141	0.67	+0.0
4,368,027	+	yjeH	b4141	0.67	-0.2
4,368,037	-	yjeH	b4141	0.68	+0.1
4,368,046	-	yjeH	b4141	0.69	+0.3
4,368,064	+	yjeH	b4141	0.70	-0.3
4,368,100	-	yjeH	b4141	0.73	+0.4
4,368,169	+	yjeH	b4141	0.79	-0.2
4,368,235	-	yjeH	b4141	0.84	+0.2
4,368,312	-				-0.6
4,368,316	+				+0.0
4,368,388	-				-0.2
4,368,402	+				-0.0
4,368,402	+				-0.3
4,368,547	+				-0.3
4,368,600	+				+0.3
4,368,608	-				+2.7
4,368,999	+				-0.6
4,369,015	+				-0.4
4,369,015	+				+0.1
4,369,037	+				+0.4