Strain Fitness in Escherichia coli BW25113 around b3494

Experiment: Ying_AminoAcid20 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 2
3,636,470	-	pitA	b3493	0.54	+0.2
3,636,477	+	pitA	b3493	0.54	+0.2
3,636,479	-	pitA	b3493	0.54	-0.0
3,636,494	+	pitA	b3493	0.55	+1.2
3,636,494	+	pitA	b3493	0.55	+0.3
3,636,494	+	pitA	b3493	0.55	+0.3
3,636,495	-	pitA	b3493	0.55	-0.5
3,636,495	-	pitA	b3493	0.55	+0.4
3,636,502	-	pitA	b3493	0.56	-0.5
3,636,502	-	pitA	b3493	0.56	-0.5
3,636,504	+	pitA	b3493	0.56	-0.6
3,636,504	+	pitA	b3493	0.56	-1.1
3,636,521	-	pitA	b3493	0.57	+0.3
3,636,578	+	pitA	b3493	0.61	+0.1
3,636,578	+	pitA	b3493	0.61	+0.3
3,636,604	+	pitA	b3493	0.63	+1.0
3,636,657	+	pitA	b3493	0.66	-0.2
3,636,665	-	pitA	b3493	0.67	+1.1
3,636,684	-	pitA	b3493	0.68	+0.4
3,636,697	-	pitA	b3493	0.69	-1.2
3,636,697	-	pitA	b3493	0.69	+0.8
3,636,721	-	pitA	b3493	0.70	+0.6
3,636,736	+	pitA	b3493	0.71	+0.2
3,636,748	-	pitA	b3493	0.72	+0.2
3,636,773	-	pitA	b3493	0.74	+0.1
3,636,773	-	pitA	b3493	0.74	+0.5
3,636,797	-	pitA	b3493	0.75	+0.7
3,636,805	-	pitA	b3493	0.76	+2.8
3,636,805	-	pitA	b3493	0.76	-0.6
3,636,812	-	pitA	b3493	0.76	+1.3
3,636,821	-	pitA	b3493	0.77	+0.0
3,636,822	-	pitA	b3493	0.77	+0.7
3,636,822	-	pitA	b3493	0.77	+0.8
3,636,854	+	pitA	b3493	0.79	-0.7
3,636,856	-	pitA	b3493	0.79	-1.1
3,636,856	-	pitA	b3493	0.79	-0.1
3,636,865	+	pitA	b3493	0.80	+0.5
3,636,865	+	pitA	b3493	0.80	+1.7
3,636,865	+	pitA	b3493	0.80	-0.1
3,636,887	-	pitA	b3493	0.81	-1.0
3,636,913	+	pitA	b3493	0.83	+2.3
3,636,919	+	pitA	b3493	0.84	+0.9
3,636,920	+	pitA	b3493	0.84	+1.8
3,636,921	-	pitA	b3493	0.84	+1.4
3,636,948	-	pitA	b3493	0.86	+1.6
3,636,960	+	pitA	b3493	0.86	+1.2
3,636,986	+	pitA	b3493	0.88	+0.1
3,636,993	+	pitA	b3493	0.89	+1.3
3,637,004	+				+0.8
3,637,004	+	pitA	b3493	0.89	-0.1
3,637,004	+	pitA	b3493	0.89	+0.1
3,637,009	-	pitA	b3493	0.90	-2.0
3,637,011	-	pitA	b3493	0.90	+1.2
3,637,022	-				-0.9
3,637,039	+				-1.2
3,637,039	+				-0.4
3,637,041	+				+0.6
3,637,046	-				+0.5
3,637,054	+				+0.1
3,637,054	+				-0.2
3,637,062	+				+1.0
3,637,062	+				-1.1
3,637,062	-				-0.4
3,637,070	-				+0.8
3,637,070	-				+0.6
3,637,076	+				+0.0
3,637,090	+				-0.8
3,637,092	-				+0.7
3,637,097	-				+0.2
3,637,106	-				-0.5
3,637,109	+				+1.7
3,637,135	+				+0.6
3,637,172	+				+0.5
3,637,205	+				+0.3
3,637,205	+				-0.6
3,637,215	-				+0.3
3,637,215	-				-0.6
3,637,234	-				+0.5
3,637,312	-				+0.3
3,637,312	-				+0.7
3,637,314	+				-0.9
3,637,317	-				-0.4
3,637,367	-				-0.2
3,637,372	-				-0.4
3,637,401	+				+0.0
3,637,443	+	yhiO	b3494	0.10	+0.6
3,637,443	+	yhiO	b3494	0.10	-0.2
3,637,443	+	yhiO	b3494	0.10	-0.4
3,637,443	+	yhiO	b3494	0.10	+0.9
3,637,446	-	yhiO	b3494	0.11	+0.1
3,637,454	+	yhiO	b3494	0.14	+0.2
3,637,454	+	yhiO	b3494	0.14	-0.0
3,637,459	-	yhiO	b3494	0.15	+0.5
3,637,459	-	yhiO	b3494	0.15	+0.8
3,637,463	-	yhiO	b3494	0.16	+1.2
3,637,468	-	yhiO	b3494	0.18	+2.2
3,637,487	-	yhiO	b3494	0.24	+0.4
3,637,496	-	yhiO	b3494	0.26	+0.5
3,637,529	+	yhiO	b3494	0.36	+0.3
3,637,539	+	yhiO	b3494	0.39	+0.9
3,637,558	-	yhiO	b3494	0.45	+0.0
3,637,577	-	yhiO	b3494	0.50	+0.5
3,637,579	-	yhiO	b3494	0.51	+0.8
3,637,614	+	yhiO	b3494	0.61	+0.7
3,637,650	-	yhiO	b3494	0.72	+0.2
3,637,655	-	yhiO	b3494	0.74	+0.0
3,637,670	+	yhiO	b3494	0.78	-0.2
3,637,715	+				+2.8
3,637,733	+				+0.5
3,637,735	+				+0.3
3,637,741	-				+0.1
3,637,741	-				-0.1
3,637,741	-				+0.8
3,637,746	-				+0.4
3,637,780	-				-0.0
3,637,783	+				+0.2
3,637,824	+				-0.2
3,637,832	-				-0.6
3,637,854	+				-0.0
3,637,854	+				-0.1
3,637,865	+				+1.6
3,637,865	+				+0.1
3,637,873	-				+0.3
3,637,875	-				-0.8
3,637,875	-				-0.4
3,637,875	-				-0.1
3,637,877	+				+0.5
3,637,877	+				+0.8
3,637,878	-				+0.2
3,637,909	+				+0.1
3,637,909	+				+0.1
3,637,926	-				+0.0
3,637,969	-				-0.3
3,638,006	-				+0.4
3,638,014	+				+0.4
3,638,033	+				+0.2
3,638,053	-				-0.5
3,638,079	-				+0.4
3,638,083	+				-0.1
3,638,090	-				-0.0
3,638,100	-				-0.2
3,638,203	-	uspA	b3495	0.16	-0.8
3,638,203	-	uspA	b3495	0.16	-0.5
3,638,205	+	uspA	b3495	0.16	+0.1
3,638,207	+	uspA	b3495	0.17	-0.4
3,638,207	+	uspA	b3495	0.17	+0.0
3,638,211	-	uspA	b3495	0.18	+0.3
3,638,213	-	uspA	b3495	0.18	+0.8
3,638,215	+	uspA	b3495	0.19	+0.4
3,638,215	+	uspA	b3495	0.19	-0.5
3,638,225	-	uspA	b3495	0.21	+0.0
3,638,266	+	uspA	b3495	0.30	-0.1
3,638,266	+	uspA	b3495	0.30	-0.1
3,638,266	+	uspA	b3495	0.30	-0.3
3,638,266	+	uspA	b3495	0.30	+0.6
3,638,268	+	uspA	b3495	0.31	-0.1
3,638,274	-	uspA	b3495	0.32	-0.1
3,638,276	-	uspA	b3495	0.33	-0.7
3,638,318	+	uspA	b3495	0.42	-0.4
3,638,333	+	uspA	b3495	0.46	+0.5
3,638,333	+	uspA	b3495	0.46	-0.3
3,638,338	+	uspA	b3495	0.47	+0.2
3,638,345	-	uspA	b3495	0.49	+0.5
3,638,345	-	uspA	b3495	0.49	+0.2
3,638,383	+	uspA	b3495	0.57	-0.1
3,638,386	+	uspA	b3495	0.58	+0.9
3,638,386	+	uspA	b3495	0.58	-0.3
3,638,395	+	uspA	b3495	0.60	-0.3
3,638,395	+	uspA	b3495	0.60	-0.4
3,638,408	+	uspA	b3495	0.63	-0.3
3,638,408	+	uspA	b3495	0.63	+0.1
3,638,412	+	uspA	b3495	0.64	-0.1
3,638,412	+	uspA	b3495	0.64	+1.1
3,638,455	-	uspA	b3495	0.74	+0.2
3,638,495	+	uspA	b3495	0.83	+0.0
3,638,511	+	uspA	b3495	0.87	-0.1
3,638,511	+	uspA	b3495	0.87	-0.8
3,638,519	-	uspA	b3495	0.89	-0.1
3,638,530	+				+0.0
3,638,536	-				-0.3
3,638,536	-				+0.2
3,638,542	+				-0.6
3,638,550	-				-0.3
3,638,561	-				+0.4
3,638,582	+				+0.1
3,638,582	+				-0.1
3,638,630	+				-0.6
3,638,638	+				+0.5
3,638,639	-				+0.2
3,638,639	-				-0.3
3,638,649	-				+0.8
3,638,649	-				+0.1
3,638,675	+				+0.3
3,638,683	-				+0.1
3,638,683	-				+0.9