Strain Fitness in Escherichia coli BW25113 around b3238

Experiment: Ying_AminoAcid20 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 2
3,382,656	-				+0.3
3,382,656	-				+0.1
3,382,689	+				-0.1
3,382,709	-				-0.3
3,382,722	+				-1.3
3,382,730	-				-1.2
3,382,730	-				-2.3
3,382,737	+				-1.4
3,382,739	-				-0.9
3,382,754	+				-1.5
3,382,829	-	argR	b3237	0.22	-0.5
3,382,829	-	argR	b3237	0.22	-2.6
3,382,888	-	argR	b3237	0.35	-1.4
3,382,941	-	argR	b3237	0.46	-1.0
3,382,941	-	argR	b3237	0.46	-2.7
3,382,955	-	argR	b3237	0.49	-2.3
3,382,957	+	argR	b3237	0.49	-1.5
3,383,008	-	argR	b3237	0.60	-1.7
3,383,024	-	argR	b3237	0.63	-1.3
3,383,039	+	argR	b3237	0.67	-2.2
3,383,059	+	argR	b3237	0.71	-0.5
3,383,063	+	argR	b3237	0.72	-1.0
3,383,118	-	argR	b3237	0.83	+0.6
3,383,118	-	argR	b3237	0.83	-0.6
3,383,137	-	argR	b3237	0.87	-1.4
3,383,153	-				-3.3
3,383,236	-				+0.2
3,383,249	-				-0.5
3,383,250	-				-0.0
3,383,430	+				+0.8
3,383,430	+				-0.3
3,383,466	+				+0.1
3,383,524	-				+0.2
3,383,524	-				-0.4
3,383,546	-				+0.4
3,383,573	+				-0.2
3,383,650	-	yhcN	b3238	0.34	+1.2
3,383,650	-	yhcN	b3238	0.34	+2.7
3,383,790	+	yhcN	b3238	0.87	+0.5
3,383,833	+				-1.9
3,383,833	+				+0.6
3,383,903	+				-0.3
3,383,903	+				+0.9
3,384,023	+	yhcO	b3239	0.53	+0.4
3,384,032	+	yhcO	b3239	0.56	+0.1
3,384,042	-	yhcO	b3239	0.60	+0.0
3,384,042	-	yhcO	b3239	0.60	-0.0
3,384,042	-	yhcO	b3239	0.60	+0.8
3,384,193	+				+0.1
3,384,193	+				-0.0
3,384,208	-				-0.2
3,384,208	-				-0.2
3,384,239	+				-0.7
3,384,239	+				-0.7
3,384,270	-				-0.3
3,384,288	-				-1.3
3,384,288	-				+0.1
3,384,325	+				-0.0
3,384,325	+				-0.7
3,384,425	+				+0.1
3,384,430	+				+0.1
3,384,587	+	aaeB	b3240	0.17	+0.1
3,384,605	+	aaeB	b3240	0.18	+0.3
3,384,605	+	aaeB	b3240	0.18	-0.7
3,384,620	+				+0.7
3,384,624	+				-0.6
3,384,676	-	aaeB	b3240	0.22	+0.2
3,384,681	-	aaeB	b3240	0.22	-0.0
3,384,790	+	aaeB	b3240	0.28	+0.2
3,384,795	+	aaeB	b3240	0.28	+0.0