Strain Fitness in Escherichia coli BW25113 around b3113

Experiment: Ying_AminoAcid20 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 2
3,256,768	+	tdcG	b4471	0.34	-0.0
3,256,776	-	tdcG	b4471	0.34	+0.4
3,256,811	+	tdcG	b4471	0.37	-0.5
3,256,832	-	tdcG	b4471	0.38	+0.3
3,256,832	-	tdcG	b4471	0.38	+0.1
3,257,003	-	tdcG	b4471	0.51	+1.1
3,257,004	-	tdcG	b4471	0.51	+0.1
3,257,037	-	tdcG	b4471	0.53	-0.2
3,257,106	+	tdcG	b4471	0.59	+0.8
3,257,106	+	tdcG	b4471	0.59	+1.0
3,257,114	-	tdcG	b4471	0.59	-0.4
3,257,114	-	tdcG	b4471	0.59	+0.3
3,257,196	+	tdcG	b4471	0.65	+0.4
3,257,196	+	tdcG	b4471	0.65	-0.3
3,257,238	+	tdcG	b4471	0.68	+0.9
3,257,260	-	tdcG	b4471	0.70	-0.5
3,257,260	-	tdcG	b4471	0.70	+0.2
3,257,281	-	tdcG	b4471	0.71	+0.2
3,257,281	-	tdcG	b4471	0.71	+0.2
3,257,322	-	tdcG	b4471	0.74	+0.5
3,257,402	-	tdcG	b4471	0.80	-0.0
3,257,419	-	tdcG	b4471	0.81	+0.3
3,257,436	+	tdcG	b4471	0.83	-0.6
3,257,516	-	tdcG	b4471	0.89	+0.4
3,257,516	-	tdcG	b4471	0.89	+0.1
3,257,517	+	tdcG	b4471	0.89	+0.1
3,257,536	+				-0.0
3,257,544	-				-1.0
3,257,544	-				+0.4
3,257,544	-				+0.2
3,257,544	-				-0.3
3,257,608	+				-0.8
3,257,608	+				-0.1
3,257,622	-				+0.5
3,257,695	+				-0.5
3,257,716	+				+0.5
3,257,745	+				+0.8
3,257,748	-				+0.1
3,257,813	+	yhaR	b3113	0.18	+0.1
3,257,825	+	yhaR	b3113	0.21	-0.2
3,257,825	+	yhaR	b3113	0.21	-1.1
3,257,865	-	yhaR	b3113	0.31	+0.3
3,257,937	+	yhaR	b3113	0.50	+0.0
3,257,937	+	yhaR	b3113	0.50	+0.4
3,257,957	-	yhaR	b3113	0.55	-0.5
3,258,052	-	yhaR	b3113	0.79	-0.2
3,258,054	-	yhaR	b3113	0.80	+0.2
3,258,059	-	yhaR	b3113	0.81	-0.5
3,258,086	-	yhaR	b3113	0.88	+0.6
3,258,192	+				+0.6
3,258,202	+				+0.9
3,258,202	+				+0.7
3,258,220	-				+0.3
3,258,220	-				-0.1
3,258,314	-				+0.3
3,258,372	+				+0.4
3,258,428	-	tdcE	b3114	0.12	-0.4
3,258,437	-	tdcE	b3114	0.13	-0.4
3,258,620	-	tdcE	b3114	0.21	-0.3
3,258,620	-	tdcE	b3114	0.21	-0.2
3,258,633	-	tdcE	b3114	0.21	+0.2
3,258,636	+	tdcE	b3114	0.21	+0.4
3,258,641	+	tdcE	b3114	0.22	+0.7
3,258,689	+	tdcE	b3114	0.24	-0.1
3,258,758	-	tdcE	b3114	0.27	-0.5
3,258,758	-	tdcE	b3114	0.27	-0.5
3,258,785	+	tdcE	b3114	0.28	-0.4
3,258,808	-	tdcE	b3114	0.29	+0.2
3,258,808	-	tdcE	b3114	0.29	-0.2
3,258,934	+	tdcE	b3114	0.34	+0.3
3,258,934	+	tdcE	b3114	0.34	+0.4
3,258,936	+	tdcE	b3114	0.34	+0.2
3,258,936	+	tdcE	b3114	0.34	+0.1
3,258,959	-	tdcE	b3114	0.35	+0.4
3,258,964	-	tdcE	b3114	0.36	+0.1
3,259,013	+	tdcE	b3114	0.38	+0.1
3,259,013	+	tdcE	b3114	0.38	-0.5
3,259,060	-	tdcE	b3114	0.40	+0.1
3,259,070	+	tdcE	b3114	0.40	+0.2