Strain Fitness in Escherichia coli BW25113 around b2811

Experiment: Ying_AminoAcid20 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 2
2,941,619	-	csdA	b2810	0.22	+1.2
2,941,619	-	csdA	b2810	0.22	-0.2
2,941,657	+	csdA	b2810	0.25	-0.9
2,941,663	-	csdA	b2810	0.25	+0.4
2,941,736	+	csdA	b2810	0.31	-0.6
2,941,743	-	csdA	b2810	0.32	+0.0
2,941,790	-	csdA	b2810	0.36	-0.7
2,941,790	-	csdA	b2810	0.36	-0.2
2,941,898	-	csdA	b2810	0.45	+0.2
2,941,934	+	csdA	b2810	0.48	-0.4
2,941,940	+	csdA	b2810	0.48	-0.0
2,942,060	-	csdA	b2810	0.58	+0.1
2,942,082	+	csdA	b2810	0.60	+0.0
2,942,082	+	csdA	b2810	0.60	+0.1
2,942,244	-	csdA	b2810	0.73	-0.6
2,942,244	-	csdA	b2810	0.73	-0.3
2,942,291	-	csdA	b2810	0.77	+0.4
2,942,404	+	csdA	b2810	0.87	+0.4
2,942,492	+				+0.0
2,942,500	-				+0.1
2,942,500	-				-0.1
2,942,522	+				-0.5
2,942,588	+				+0.5
2,942,603	+				-0.0
2,942,639	-	ygdK	b2811	0.17	-0.4
2,942,639	-	ygdK	b2811	0.17	-0.2
2,942,733	-	ygdK	b2811	0.38	+0.1
2,942,908	+	ygdK	b2811	0.77	+1.6
2,942,935	+	ygdK	b2811	0.84	+0.8
2,942,935	+	ygdK	b2811	0.84	+0.3
2,942,935	+	ygdK	b2811	0.84	+0.7
2,942,943	-	ygdK	b2811	0.85	-1.1
2,942,996	+				-0.2
2,943,138	-				-0.3
2,943,208	+	ygdL	b2812	0.19	+0.1
2,943,208	+	ygdL	b2812	0.19	-0.1
2,943,240	-	ygdL	b2812	0.23	+0.0
2,943,453	+	ygdL	b2812	0.49	-0.1
2,943,473	-	ygdL	b2812	0.51	-0.7
2,943,478	-	ygdL	b2812	0.52	+0.4
2,943,509	+	ygdL	b2812	0.56	+0.9
2,943,509	+	ygdL	b2812	0.56	+0.2
2,943,517	-	ygdL	b2812	0.57	-0.2
2,943,517	-	ygdL	b2812	0.57	-0.9
2,943,517	-	ygdL	b2812	0.57	+0.3
2,943,532	-	ygdL	b2812	0.59	-0.1
2,943,563	-	ygdL	b2812	0.63	-0.7
2,943,580	-	ygdL	b2812	0.65	+0.4
2,943,580	-	ygdL	b2812	0.65	-0.6
2,943,636	-	ygdL	b2812	0.72	+0.2
2,943,754	-	ygdL	b2812	0.86	+0.6
2,943,756	+	ygdL	b2812	0.86	-0.4
2,943,756	+	ygdL	b2812	0.86	-0.8
2,943,769	-	ygdL	b2812	0.88	+0.1
2,943,805	+				+0.1
2,943,890	+				+0.1
2,943,890	+				+0.0
2,943,904	-				+0.5
2,943,904	-				+0.1
2,943,910	-				+0.7
2,943,910	-				-0.1