Strain Fitness in Escherichia coli BW25113 around b2784

Experiment: Ying_AminoAcid20 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 2
2,908,538	+	mazG	b2781	0.79	+0.2
2,908,571	+	mazG	b2781	0.83	-0.1
2,908,624	+	mazG	b2781	0.89	-1.0
2,908,674	+				+0.3
2,908,674	+				-0.3
2,908,674	+				+0.0
2,908,674	+				+0.4
2,908,682	-				+0.0
2,908,754	-				-0.2
2,908,754	-				+0.4
2,908,764	-				+0.4
2,908,764	-				-0.6
2,908,772	+				-0.6
2,908,772	+				-0.4
2,908,854	+	chpA	b2782	0.23	-0.3
2,908,991	-	chpA	b2782	0.63	-0.8
2,909,017	-	chpA	b2782	0.71	-0.6
2,909,017	-	chpA	b2782	0.71	-0.6
2,909,032	+	chpA	b2782	0.76	-0.1
2,909,032	+	chpA	b2782	0.76	+0.3
2,909,253	+	chpR	b2783	0.56	-0.7
2,909,258	+	chpR	b2783	0.58	-0.3
2,909,311	+	chpR	b2783	0.80	+0.4
2,909,487	+				+0.8
2,909,487	+				+1.1
2,909,490	-				-0.0
2,909,490	-				-0.1
2,909,556	-				+0.3
2,909,669	-	relA	b2784	0.10	+0.4
2,909,776	+	relA	b2784	0.15	-0.0
2,909,776	+	relA	b2784	0.15	+0.2
2,910,051	-	relA	b2784	0.27	+0.3
2,910,051	-	relA	b2784	0.27	+0.5
2,910,174	+	relA	b2784	0.33	+0.7
2,910,174	+	relA	b2784	0.33	+0.5
2,910,294	-	relA	b2784	0.38	+0.4
2,910,313	+	relA	b2784	0.39	+1.1
2,910,476	+	relA	b2784	0.46	+0.9
2,910,476	+	relA	b2784	0.46	+0.6
2,910,488	-	relA	b2784	0.47	-0.2
2,910,567	+	relA	b2784	0.50	+0.4
2,910,632	+	relA	b2784	0.53	+1.1
2,910,632	+	relA	b2784	0.53	+0.2
2,910,685	+	relA	b2784	0.56	+0.0
2,910,721	-	relA	b2784	0.57	-0.2
2,910,721	-	relA	b2784	0.57	+0.5
2,910,721	-	relA	b2784	0.57	+0.8
2,910,788	-	relA	b2784	0.60	+0.3
2,910,788	-	relA	b2784	0.60	+0.5
2,910,788	-	relA	b2784	0.60	+0.5
2,910,895	-	relA	b2784	0.65	-0.7
2,910,895	-	relA	b2784	0.65	+0.1
2,910,898	+	relA	b2784	0.65	-0.1
2,910,898	+	relA	b2784	0.65	+0.4
2,910,921	+	relA	b2784	0.66	+0.9
2,910,921	+	relA	b2784	0.66	+0.4
2,910,985	+	relA	b2784	0.69	+0.9
2,911,020	-	relA	b2784	0.71	+0.8
2,911,134	-	relA	b2784	0.76	+0.7
2,911,196	+	relA	b2784	0.79	-0.1
2,911,201	+	relA	b2784	0.79	+0.6
2,911,201	+	relA	b2784	0.79	+0.7
2,911,283	+	relA	b2784	0.83	-1.6
2,911,283	+	relA	b2784	0.83	+0.8
2,911,283	+	relA	b2784	0.83	-0.2
2,911,297	+	relA	b2784	0.83	+0.4
2,911,300	-	relA	b2784	0.83	+1.0
2,911,301	-	relA	b2784	0.83	+1.1
2,911,301	-	relA	b2784	0.83	+0.1
2,911,331	+	relA	b2784	0.85	+0.6
2,911,331	+	relA	b2784	0.85	-0.7
2,911,360	-	relA	b2784	0.86	+0.7
2,911,456	-				+0.7
2,911,488	-				+0.0
2,911,525	+				+0.8
2,911,525	+				-0.2
2,911,568	-				+0.8
2,911,568	-				+0.3
2,911,572	+				-0.1
2,911,572	+				-0.0
2,911,598	+				+1.3
2,911,690	-				-0.2
2,911,795	-				+0.1
2,911,851	+				-0.8
2,911,851	+				+1.2
2,911,854	+	rumA	b2785	0.10	-0.4
2,911,859	+	rumA	b2785	0.11	+0.4
2,911,860	-	rumA	b2785	0.11	-0.2
2,911,861	-	rumA	b2785	0.11	-0.5
2,911,870	+	rumA	b2785	0.11	-0.6
2,911,903	+	rumA	b2785	0.14	+0.4
2,911,931	-	rumA	b2785	0.16	-1.5
2,911,978	-	rumA	b2785	0.20	-1.1
2,912,077	+	rumA	b2785	0.27	-0.3
2,912,087	+	rumA	b2785	0.28	+0.2
2,912,087	+	rumA	b2785	0.28	-0.5
2,912,117	-	rumA	b2785	0.30	-0.6
2,912,168	+	rumA	b2785	0.34	+0.5
2,912,263	+	rumA	b2785	0.42	+0.2
2,912,343	-	rumA	b2785	0.48	+0.2
2,912,387	+	rumA	b2785	0.51	+0.5
2,912,433	+	rumA	b2785	0.55	-1.7
2,912,462	+	rumA	b2785	0.57	-0.2
2,912,465	-	rumA	b2785	0.57	-0.3
2,912,480	+	rumA	b2785	0.58	+0.0
2,912,556	+	rumA	b2785	0.64	+0.7
2,912,559	+	rumA	b2785	0.64	-0.5
2,912,646	+	rumA	b2785	0.71	-0.2
2,912,654	-	rumA	b2785	0.72	-0.1
2,912,668	+	rumA	b2785	0.73	+0.3
2,912,668	+	rumA	b2785	0.73	-1.3
2,912,668	+	rumA	b2785	0.73	+0.1
2,912,668	+	rumA	b2785	0.73	+0.2