Strain Fitness in Escherichia coli BW25113 around b2661

Experiment: Ying_AminoAcid20 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 2
2,788,322	-	ygaF	b2660	0.25	-0.1
2,788,324	-	ygaF	b2660	0.25	-1.6
2,788,324	-	ygaF	b2660	0.25	-0.7
2,788,349	-	ygaF	b2660	0.27	+0.3
2,788,551	+	ygaF	b2660	0.43	+0.1
2,788,551	+	ygaF	b2660	0.43	-0.8
2,788,665	-	ygaF	b2660	0.52	+0.1
2,788,753	-	ygaF	b2660	0.59	-0.0
2,788,753	-	ygaF	b2660	0.59	-0.4
2,788,861	+	ygaF	b2660	0.68	+0.9
2,788,861	+	ygaF	b2660	0.68	-0.0
2,788,931	-	ygaF	b2660	0.73	+0.6
2,789,116	-	ygaF	b2660	0.88	+0.3
2,789,211	-				-0.7
2,789,230	+				-0.5
2,789,230	+				+0.8
2,789,254	-				-0.1
2,789,254	-				+0.1
2,789,309	-				+0.1
2,789,344	-				-1.1
2,789,436	+				-0.3
2,789,699	+	gabD	b2661	0.28	-0.1
2,789,739	-	gabD	b2661	0.31	-0.8
2,789,739	-	gabD	b2661	0.31	-0.7
2,789,765	-	gabD	b2661	0.32	-0.4
2,789,952	-	gabD	b2661	0.45	-0.8
2,790,018	+	gabD	b2661	0.50	+0.3
2,790,018	+	gabD	b2661	0.50	+0.4
2,790,034	-	gabD	b2661	0.51	-0.2
2,790,099	+	gabD	b2661	0.55	+0.2
2,790,099	+	gabD	b2661	0.55	-0.4
2,790,123	+	gabD	b2661	0.57	-0.0
2,790,123	+	gabD	b2661	0.57	-0.2
2,790,471	+	gabD	b2661	0.81	-0.5
2,790,471	+	gabD	b2661	0.81	+0.8
2,790,471	-	gabD	b2661	0.81	+0.8
2,790,502	+	gabD	b2661	0.83	+0.3
2,790,534	-	gabD	b2661	0.86	+0.4
2,790,534	-	gabD	b2661	0.86	+0.9
2,790,588	+	gabD	b2661	0.89	-0.0
2,790,675	+				+0.2
2,790,922	+	gabT	b2662	0.13	-0.2
2,791,013	+	gabT	b2662	0.20	+0.3
2,791,077	+	gabT	b2662	0.25	-0.0
2,791,085	-	gabT	b2662	0.26	+0.2
2,791,085	-	gabT	b2662	0.26	+1.3
2,791,088	+	gabT	b2662	0.26	+0.9
2,791,183	-	gabT	b2662	0.33	+1.6
2,791,183	-	gabT	b2662	0.33	+0.2
2,791,223	-	gabT	b2662	0.36	+0.1
2,791,324	-	gabT	b2662	0.44	+0.1
2,791,454	+	gabT	b2662	0.54	+1.1
2,791,462	-	gabT	b2662	0.55	-0.6
2,791,487	+	gabT	b2662	0.57	-0.6
2,791,509	+	gabT	b2662	0.59	+0.2
2,791,532	-	gabT	b2662	0.60	-0.8
2,791,597	-	gabT	b2662	0.66	+0.3
2,791,597	-	gabT	b2662	0.66	+0.2
2,791,688	+	gabT	b2662	0.73	+0.5