Strain Fitness in Escherichia coli BW25113 around b2103

Experiment: Ying_AminoAcid20 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 2
2,180,829	+				+2.0
2,180,837	-				+0.1
2,180,886	+				-1.0
2,180,896	-				+0.1
2,180,902	-				-0.5
2,180,902	-				-0.6
2,180,904	-				+0.5
2,180,917	-				+0.2
2,180,934	+				+0.3
2,180,934	+				-0.8
2,180,961	-	yegX	b2102	0.13	-0.3
2,181,005	-				+0.8
2,181,005	-	yegX	b2102	0.18	+0.2
2,181,027	+	yegX	b2102	0.21	+0.6
2,181,027	+	yegX	b2102	0.21	+0.0
2,181,202	-	yegX	b2102	0.42	+0.3
2,181,202	-	yegX	b2102	0.42	-0.0
2,181,221	+	yegX	b2102	0.45	-0.9
2,181,256	-	yegX	b2102	0.49	-0.6
2,181,376	+	yegX	b2102	0.64	-0.1
2,181,460	+	yegX	b2102	0.74	+0.7
2,181,467	+	yegX	b2102	0.75	+0.2
2,181,485	-	yegX	b2102	0.77	+0.1
2,181,497	-	yegX	b2102	0.78	-0.6
2,181,516	-	yegX	b2102	0.81	-0.1
2,181,525	+	yegX	b2102	0.82	+0.0
2,181,548	+	yegX	b2102	0.85	-0.2
2,181,628	+				+0.1
2,181,628	+				+0.0
2,181,631	+				-0.3
2,181,660	+				+0.1
2,181,678	-				+0.3
2,181,695	+				-0.1
2,181,726	+				+0.1
2,181,731	-				+0.1
2,181,749	-				+0.2
2,181,801	-				+0.8
2,181,806	-				-0.4
2,181,875	+	thiD	b2103	0.17	+0.2
2,181,883	-	thiD	b2103	0.18	+0.4
2,181,883	-	thiD	b2103	0.18	+0.0
2,181,883	-	thiD	b2103	0.18	-0.1
2,182,009	+	thiD	b2103	0.34	+0.1
2,182,009	+	thiD	b2103	0.34	+0.1
2,182,012	+	thiD	b2103	0.34	+0.1
2,182,020	-	thiD	b2103	0.35	-1.0
2,182,119	-	thiD	b2103	0.48	-0.6
2,182,150	-	thiD	b2103	0.51	+0.8
2,182,161	+	thiD	b2103	0.53	-0.9
2,182,375	+	thiD	b2103	0.80	-0.0
2,182,375	+	thiD	b2103	0.80	+0.9
2,182,382	+	thiD	b2103	0.80	+0.4
2,182,546	-				-0.2
2,182,646	+	thiM	b2104	0.14	-0.4
2,183,006	-	thiM	b2104	0.60	-0.2
2,183,006	-	thiM	b2104	0.60	-0.5
2,183,044	+	thiM	b2104	0.65	-0.3
2,183,246	+				-0.3
2,183,246	+				-0.2
2,183,259	-				-1.3
2,183,259	-				+0.2
2,183,389	-				-1.8
2,183,399	-				-0.2
2,183,399	-				-0.1
2,183,399	-				+0.3
2,183,495	-				+0.6
2,183,533	-				+0.5