Strain Fitness in Escherichia coli BW25113 around b0723

Experiment: Ying_AminoAcid20 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 2
754,174	+				+0.3
754,209	+				-0.1
754,305	+				+0.1
754,305	+				+0.1
754,385	+				-1.8
754,477	-	sdhC	b0721	0.20	-4.1
754,507	-	sdhC	b0721	0.27	-4.9
754,512	+	sdhC	b0721	0.29	-1.6
754,550	+	sdhC	b0721	0.38	-2.4
754,636	-	sdhC	b0721	0.61	-3.2
754,663	-	sdhC	b0721	0.67	-4.2
754,715	+	sdhC	b0721	0.81	-1.2
754,759	-				-2.6
754,775	-				-2.8
754,802	+				-2.2
754,809	+				-1.7
754,909	-	sdhD	b0722	0.36	-3.3
754,950	+	sdhD	b0722	0.48	-2.2
754,966	-	sdhD	b0722	0.53	-2.3
754,977	+	sdhD	b0722	0.56	-1.8
754,990	+	sdhD	b0722	0.59	-1.0
755,014	-	sdhD	b0722	0.66	-2.1
755,019	+	sdhD	b0722	0.68	-1.0
755,045	+	sdhD	b0722	0.75	-1.2
755,083	-	sdhD	b0722	0.86	-1.5
755,098	+				-0.4
755,115	+				-0.3
755,115	+				-0.4
755,116	-				-3.0
755,290	+				-2.0
755,301	+				-1.4
755,320	+	sdhA	b0723	0.11	-2.7
755,323	-	sdhA	b0723	0.11	-2.9
755,344	-	sdhA	b0723	0.12	-2.9
755,353	+	sdhA	b0723	0.13	-2.5
755,366	-	sdhA	b0723	0.13	-2.0
755,368	-	sdhA	b0723	0.13	-3.6
755,382	+	sdhA	b0723	0.14	-1.6
755,424	+	sdhA	b0723	0.17	-2.7
755,424	+	sdhA	b0723	0.17	-3.8
755,461	-	sdhA	b0723	0.19	-4.1
755,461	-	sdhA	b0723	0.19	-4.4
755,481	-	sdhA	b0723	0.20	-3.0
755,491	-	sdhA	b0723	0.20	-4.5
755,554	+	sdhA	b0723	0.24	-3.4
755,562	+	sdhA	b0723	0.24	-3.0
755,562	+	sdhA	b0723	0.24	-2.1
755,562	+	sdhA	b0723	0.24	-2.8
755,564	+	sdhA	b0723	0.25	-2.1
755,570	-	sdhA	b0723	0.25	-3.3
755,570	-	sdhA	b0723	0.25	-2.7
755,570	-	sdhA	b0723	0.25	-4.5
755,572	+	sdhA	b0723	0.25	-3.6
755,625	+	sdhA	b0723	0.28	-1.9
755,626	-	sdhA	b0723	0.28	-1.9
755,658	+	sdhA	b0723	0.30	-2.5
755,658	+	sdhA	b0723	0.30	-2.4
755,663	+	sdhA	b0723	0.30	-1.7
755,676	-	sdhA	b0723	0.31	-3.1
755,676	-	sdhA	b0723	0.31	-3.7
755,676	-	sdhA	b0723	0.31	-3.7
755,697	-	sdhA	b0723	0.32	-2.5
755,711	+	sdhA	b0723	0.33	-1.4
755,759	+	sdhA	b0723	0.36	-0.5
755,759	+	sdhA	b0723	0.36	-2.5
755,764	+	sdhA	b0723	0.36	-3.0
755,764	+	sdhA	b0723	0.36	-2.1
755,800	+	sdhA	b0723	0.38	-2.0
755,839	+				-0.4
755,842	-	sdhA	b0723	0.40	-3.1
755,961	-	sdhA	b0723	0.47	-1.5
756,184	+	sdhA	b0723	0.60	-1.3
756,390	-	sdhA	b0723	0.71	-3.1
756,390	-	sdhA	b0723	0.71	-2.6
756,455	-	sdhA	b0723	0.75	-2.9
756,455	-	sdhA	b0723	0.75	-2.1
756,500	+	sdhA	b0723	0.78	-0.7
756,500	+	sdhA	b0723	0.78	-2.0
756,642	+	sdhA	b0723	0.86	-0.7
756,677	+	sdhA	b0723	0.88	-2.0
756,680	-	sdhA	b0723	0.88	-2.8
756,685	-				-1.9
756,839	+				-2.6
756,856	-				-2.5
757,053	+	sdhB	b0724	0.20	-2.0
757,138	-	sdhB	b0724	0.32	-4.1
757,143	-	sdhB	b0724	0.32	-1.6
757,184	-	sdhB	b0724	0.38	-3.4
757,198	+	sdhB	b0724	0.40	-1.1
757,198	+	sdhB	b0724	0.40	-1.6
757,229	-	sdhB	b0724	0.44	-1.8
757,233	+	sdhB	b0724	0.45	-2.1
757,241	-	sdhB	b0724	0.46	-5.1
757,381	-	sdhB	b0724	0.65	-1.7
757,392	-	sdhB	b0724	0.67	-3.4
757,392	-	sdhB	b0724	0.67	-2.7
757,488	+	sdhB	b0724	0.80	-1.3
757,517	-	sdhB	b0724	0.84	-2.3
757,517	-	sdhB	b0724	0.84	-2.0
757,536	+				-1.7
757,536	+	sdhB	b0724	0.87	-2.5
757,536	-	sdhB	b0724	0.87	-1.8
757,544	+	sdhB	b0724	0.88	-0.6
757,544	-	sdhB	b0724	0.88	-2.4
757,566	-				-2.2
757,566	-				-3.2
757,673	+				-0.7
757,681	-				-2.6
757,703	+				+0.2
757,713	-				-4.8
757,713	-				-3.1
757,791	+				+0.4