Experiment: Ying_AminoAcid20 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt leuS and ybeL are separated by 234 nucleotides ybeL and ybeQ are separated by 69 nucleotides
b0642: leuS - leucyl-tRNA synthetase (NCBI), at 671,424 to 674,006
leuS
b0643: ybeL - hypothetical protein (NCBI), at 674,241 to 674,723
ybeL
b0644: ybeQ - orf, hypothetical protein (VIMSS), at 674,793 to 675,770
ybeQ
Position (kb) 674
675 Strain fitness (log2 ratio) -1
0
1
2 at 674.089 kb on - strand at 674.089 kb on - strand at 674.128 kb on - strand at 674.258 kb on + strand at 674.258 kb on + strand at 674.320 kb on + strand, within ybeL at 674.320 kb on + strand, within ybeL at 674.351 kb on + strand, within ybeL at 674.395 kb on + strand, within ybeL at 674.434 kb on + strand, within ybeL at 674.434 kb on + strand, within ybeL at 674.509 kb on + strand, within ybeL at 674.569 kb on + strand, within ybeL at 674.569 kb on + strand, within ybeL at 674.875 kb on + strand at 674.891 kb on - strand, within ybeQ at 674.925 kb on - strand, within ybeQ at 674.925 kb on - strand, within ybeQ at 675.016 kb on + strand, within ybeQ at 675.049 kb on - strand, within ybeQ at 675.052 kb on + strand, within ybeQ at 675.052 kb on + strand, within ybeQ at 675.057 kb on + strand, within ybeQ at 675.073 kb on - strand, within ybeQ at 675.078 kb on - strand, within ybeQ at 675.078 kb on - strand, within ybeQ at 675.087 kb on - strand, within ybeQ at 675.150 kb on - strand, within ybeQ at 675.156 kb on - strand, within ybeQ at 675.205 kb on + strand, within ybeQ at 675.213 kb on - strand, within ybeQ at 675.233 kb on - strand, within ybeQ at 675.243 kb on - strand, within ybeQ at 675.273 kb on + strand, within ybeQ at 675.284 kb on - strand, within ybeQ at 675.406 kb on - strand, within ybeQ at 675.444 kb on + strand, within ybeQ at 675.449 kb on - strand, within ybeQ at 675.449 kb on - strand, within ybeQ at 675.452 kb on - strand, within ybeQ at 675.456 kb on + strand, within ybeQ at 675.486 kb on + strand, within ybeQ at 675.486 kb on + strand, within ybeQ at 675.491 kb on - strand, within ybeQ at 675.491 kb on - strand, within ybeQ at 675.494 kb on - strand, within ybeQ at 675.530 kb on - strand, within ybeQ at 675.530 kb on - strand, within ybeQ at 675.570 kb on + strand, within ybeQ at 675.578 kb on - strand, within ybeQ at 675.580 kb on + strand, within ybeQ at 675.608 kb on + strand, within ybeQ at 675.608 kb on + strand, within ybeQ at 675.608 kb on + strand, within ybeQ
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2 remove 674,089 - -0.0 674,089 - +0.0 674,128 - +0.8 674,258 + +0.1 674,258 + +0.1 674,320 + ybeL b0643 0.16 +0.3 674,320 + ybeL b0643 0.16 +0.9 674,351 + ybeL b0643 0.23 +0.4 674,395 + ybeL b0643 0.32 +0.6 674,434 + ybeL b0643 0.40 +0.6 674,434 + ybeL b0643 0.40 +0.5 674,509 + ybeL b0643 0.55 +0.4 674,569 + ybeL b0643 0.68 +0.5 674,569 + ybeL b0643 0.68 +0.2 674,875 + +0.2 674,891 - ybeQ b0644 0.10 -0.2 674,925 - ybeQ b0644 0.13 +0.7 674,925 - ybeQ b0644 0.13 -0.1 675,016 + ybeQ b0644 0.23 -0.4 675,049 - ybeQ b0644 0.26 +0.8 675,052 + ybeQ b0644 0.26 -0.1 675,052 + ybeQ b0644 0.26 +0.0 675,057 + ybeQ b0644 0.27 -1.1 675,073 - ybeQ b0644 0.29 +0.5 675,078 - ybeQ b0644 0.29 -0.4 675,078 - ybeQ b0644 0.29 -0.6 675,087 - ybeQ b0644 0.30 -0.2 675,150 - ybeQ b0644 0.37 -0.3 675,156 - ybeQ b0644 0.37 -0.8 675,205 + ybeQ b0644 0.42 +0.2 675,213 - ybeQ b0644 0.43 -0.2 675,233 - ybeQ b0644 0.45 -0.3 675,243 - ybeQ b0644 0.46 -0.3 675,273 + ybeQ b0644 0.49 +0.3 675,284 - ybeQ b0644 0.50 +0.1 675,406 - ybeQ b0644 0.63 +0.2 675,444 + ybeQ b0644 0.67 -0.3 675,449 - ybeQ b0644 0.67 -0.4 675,449 - ybeQ b0644 0.67 +0.1 675,452 - ybeQ b0644 0.67 -0.2 675,456 + ybeQ b0644 0.68 +0.6 675,486 + ybeQ b0644 0.71 +0.3 675,486 + ybeQ b0644 0.71 -0.6 675,491 - ybeQ b0644 0.71 -0.3 675,491 - ybeQ b0644 0.71 +0.1 675,494 - ybeQ b0644 0.72 -0.5 675,530 - ybeQ b0644 0.75 +2.4 675,530 - ybeQ b0644 0.75 +0.7 675,570 + ybeQ b0644 0.79 -0.4 675,578 - ybeQ b0644 0.80 +1.2 675,580 + ybeQ b0644 0.80 +0.2 675,608 + ybeQ b0644 0.83 +0.4 675,608 + ybeQ b0644 0.83 +0.5 675,608 + ybeQ b0644 0.83 +1.8
Or see this region's nucleotide sequence