Experiment: Ying_AminoAcid20 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yajO and dxs are separated by 179 nucleotides dxs and ispA are separated by 24 nucleotides ispA and xseB overlap by 1 nucleotides
b0419: yajO - putative NAD(P)H-dependent xylose reductase (VIMSS), at 436,385 to 437,359
yajO
b0420: dxs - 1-deoxy-D-xylulose-5-phosphate synthase (NCBI), at 437,539 to 439,401
dxs
b0421: ispA - geranyltranstransferase (NCBI), at 439,426 to 440,325
ispA
b0422: xseB - exodeoxyribonuclease VII small subunit (NCBI), at 440,325 to 440,567
xseB
Position (kb) 437
438
439
440 Strain fitness (log2 ratio) -1
0
1
2 at 436.596 kb on + strand, within yajO at 436.596 kb on + strand, within yajO at 436.601 kb on - strand, within yajO at 436.655 kb on + strand, within yajO at 436.669 kb on - strand, within yajO at 436.669 kb on - strand, within yajO at 436.709 kb on + strand, within yajO at 436.748 kb on + strand, within yajO at 436.758 kb on - strand, within yajO at 437.001 kb on - strand, within yajO at 437.095 kb on + strand, within yajO at 437.123 kb on - strand, within yajO at 437.140 kb on + strand, within yajO at 437.229 kb on + strand, within yajO at 437.229 kb on + strand, within yajO at 437.235 kb on + strand, within yajO at 437.267 kb on - strand at 437.267 kb on - strand at 437.267 kb on - strand at 437.338 kb on + strand at 437.338 kb on + strand at 437.356 kb on - strand at 437.359 kb on - strand at 437.422 kb on + strand at 437.425 kb on - strand at 437.431 kb on + strand at 437.431 kb on + strand at 437.489 kb on + strand at 437.489 kb on + strand at 437.524 kb on + strand at 437.524 kb on - strand at 437.524 kb on - strand at 437.530 kb on + strand at 437.530 kb on + strand at 439.386 kb on - strand at 439.407 kb on - strand at 440.335 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2 remove 436,596 + yajO b0419 0.22 +0.5 436,596 + yajO b0419 0.22 -0.2 436,601 - yajO b0419 0.22 -0.2 436,655 + yajO b0419 0.28 +0.2 436,669 - yajO b0419 0.29 -0.2 436,669 - yajO b0419 0.29 -0.2 436,709 + yajO b0419 0.33 -0.0 436,748 + yajO b0419 0.37 -0.3 436,758 - yajO b0419 0.38 +0.4 437,001 - yajO b0419 0.63 +0.8 437,095 + yajO b0419 0.73 +0.4 437,123 - yajO b0419 0.76 +0.2 437,140 + yajO b0419 0.77 -1.1 437,229 + yajO b0419 0.87 -0.8 437,229 + yajO b0419 0.87 -0.2 437,235 + yajO b0419 0.87 -0.1 437,267 - +0.0 437,267 - +0.2 437,267 - +0.1 437,338 + +0.6 437,338 + -0.1 437,356 - +0.8 437,359 - +0.3 437,422 + +0.1 437,425 - -0.4 437,431 + +0.2 437,431 + +0.0 437,489 + +1.7 437,489 + +1.8 437,524 + -0.3 437,524 - +0.1 437,524 - +0.1 437,530 + -0.3 437,530 + -0.3 439,386 - -0.1 439,407 - +0.1 440,335 - +0.7
Or see this region's nucleotide sequence