Experiment: Ying_all64 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sgrR and sgrS are separated by 67 nucleotides sgrS and sgrT overlap by 206 nucleotides sgrT and setA are separated by 101 nucleotides
b0069: sgrR - DNA-binding transcriptional regulator (NCBI), at 75,644 to 77,299
sgrR
b4577: sgrS - small antisense RNA (NCBI), at 77,367 to 77,593
sgrS
b4662: sgrT - Inhibitor of glucose uptake (RefSeq), at 77,388 to 77,519
sgrT
b0070: setA - broad specificity sugar efflux system (NCBI), at 77,621 to 78,799
setA
Position (kb) 77
78 Strain fitness (log2 ratio) -2
-1
0
1 at 76.643 kb on + strand, within sgrR at 76.643 kb on + strand, within sgrR at 76.712 kb on - strand, within sgrR at 76.790 kb on - strand, within sgrR at 76.861 kb on + strand, within sgrR at 76.910 kb on - strand, within sgrR at 76.925 kb on - strand, within sgrR at 76.936 kb on + strand, within sgrR at 77.031 kb on + strand, within sgrR at 77.085 kb on + strand, within sgrR at 77.161 kb on - strand at 77.163 kb on + strand at 77.163 kb on + strand at 77.165 kb on + strand at 77.165 kb on + strand at 77.171 kb on - strand at 77.187 kb on - strand at 77.206 kb on - strand at 77.209 kb on - strand at 77.232 kb on - strand at 77.367 kb on - strand at 77.454 kb on - strand at 77.454 kb on - strand at 77.458 kb on + strand at 77.522 kb on + strand, within sgrS at 77.542 kb on + strand, within sgrS at 77.618 kb on + strand at 77.669 kb on + strand at 77.701 kb on + strand at 77.714 kb on - strand at 77.716 kb on + strand at 77.716 kb on + strand at 77.718 kb on + strand at 77.718 kb on + strand at 77.718 kb on + strand at 77.718 kb on + strand at 77.718 kb on + strand at 77.726 kb on - strand at 77.742 kb on + strand, within setA at 77.742 kb on + strand, within setA at 77.796 kb on + strand, within setA at 77.796 kb on + strand, within setA at 77.824 kb on - strand, within setA at 77.905 kb on + strand, within setA at 77.936 kb on + strand, within setA at 77.936 kb on + strand, within setA at 77.938 kb on + strand, within setA at 77.943 kb on + strand, within setA at 77.944 kb on - strand, within setA at 77.959 kb on + strand, within setA at 77.971 kb on + strand, within setA at 77.971 kb on + strand, within setA at 77.989 kb on - strand, within setA at 77.997 kb on - strand, within setA at 78.035 kb on + strand, within setA at 78.057 kb on + strand, within setA at 78.057 kb on + strand, within setA at 78.090 kb on + strand, within setA at 78.179 kb on - strand, within setA at 78.218 kb on - strand, within setA at 78.218 kb on - strand, within setA at 78.220 kb on - strand, within setA at 78.220 kb on - strand, within setA at 78.267 kb on - strand, within setA at 78.267 kb on - strand, within setA at 78.267 kb on - strand, within setA at 78.281 kb on - strand, within setA at 78.298 kb on + strand, within setA at 78.315 kb on - strand, within setA at 78.321 kb on + strand, within setA at 78.325 kb on - strand, within setA at 78.334 kb on + strand, within setA at 78.345 kb on - strand, within setA at 78.345 kb on - strand, within setA at 78.362 kb on - strand, within setA at 78.362 kb on - strand, within setA at 78.390 kb on - strand, within setA at 78.432 kb on - strand, within setA at 78.432 kb on - strand, within setA at 78.450 kb on + strand, within setA at 78.450 kb on + strand, within setA at 78.536 kb on - strand, within setA at 78.548 kb on - strand, within setA at 78.556 kb on + strand, within setA at 78.581 kb on + strand, within setA
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2 remove 76,643 + sgrR b0069 0.60 +0.1 76,643 + sgrR b0069 0.60 +0.2 76,712 - sgrR b0069 0.64 +0.7 76,790 - sgrR b0069 0.69 +0.2 76,861 + sgrR b0069 0.73 +0.5 76,910 - sgrR b0069 0.76 -0.4 76,925 - sgrR b0069 0.77 -0.6 76,936 + sgrR b0069 0.78 -0.6 77,031 + sgrR b0069 0.84 +0.3 77,085 + sgrR b0069 0.87 +0.2 77,161 - -0.7 77,163 + +0.7 77,163 + +0.2 77,165 + +0.3 77,165 + -0.3 77,171 - -0.5 77,187 - +0.6 77,206 - -0.1 77,209 - -0.1 77,232 - -0.1 77,367 - +0.1 77,454 - +0.2 77,454 - -0.2 77,458 + +0.1 77,522 + sgrS b4577 0.68 +0.3 77,542 + sgrS b4577 0.77 +0.3 77,618 + +0.2 77,669 + +0.2 77,701 + -0.4 77,714 - -0.2 77,716 + +0.1 77,716 + -0.1 77,718 + +0.0 77,718 + -0.5 77,718 + +0.4 77,718 + +0.0 77,718 + +0.3 77,726 - -0.1 77,742 + setA b0070 0.10 +0.1 77,742 + setA b0070 0.10 +0.1 77,796 + setA b0070 0.15 +0.1 77,796 + setA b0070 0.15 -1.1 77,824 - setA b0070 0.17 +0.3 77,905 + setA b0070 0.24 +1.0 77,936 + setA b0070 0.27 +1.2 77,936 + setA b0070 0.27 +0.4 77,938 + setA b0070 0.27 +0.4 77,943 + setA b0070 0.27 +0.2 77,944 - setA b0070 0.27 +0.1 77,959 + setA b0070 0.29 +0.2 77,971 + setA b0070 0.30 +0.4 77,971 + setA b0070 0.30 +0.1 77,989 - setA b0070 0.31 +0.3 77,997 - setA b0070 0.32 -0.6 78,035 + setA b0070 0.35 +0.1 78,057 + setA b0070 0.37 +1.0 78,057 + setA b0070 0.37 +0.1 78,090 + setA b0070 0.40 +0.2 78,179 - setA b0070 0.47 -0.8 78,218 - setA b0070 0.51 +0.6 78,218 - setA b0070 0.51 -0.1 78,220 - setA b0070 0.51 -0.5 78,220 - setA b0070 0.51 -0.3 78,267 - setA b0070 0.55 +1.2 78,267 - setA b0070 0.55 -2.0 78,267 - setA b0070 0.55 +0.1 78,281 - setA b0070 0.56 +0.1 78,298 + setA b0070 0.57 -0.2 78,315 - setA b0070 0.59 -0.1 78,321 + setA b0070 0.59 +0.1 78,325 - setA b0070 0.60 -0.7 78,334 + setA b0070 0.60 +1.0 78,345 - setA b0070 0.61 -0.8 78,345 - setA b0070 0.61 +0.1 78,362 - setA b0070 0.63 -0.5 78,362 - setA b0070 0.63 -0.1 78,390 - setA b0070 0.65 -2.2 78,432 - setA b0070 0.69 -0.1 78,432 - setA b0070 0.69 +0.0 78,450 + setA b0070 0.70 +0.2 78,450 + setA b0070 0.70 -0.2 78,536 - setA b0070 0.78 +0.3 78,548 - setA b0070 0.79 +0.1 78,556 + setA b0070 0.79 -0.0 78,581 + setA b0070 0.81 +0.3
Or see this region's nucleotide sequence