Strain Fitness in Escherichia coli BW25113 around b3262

Experiment: Ying_all64 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 2
3,408,772	-	dusB	b3260	0.49	+0.1
3,408,773	+	dusB	b3260	0.49	-0.7
3,408,842	+	dusB	b3260	0.56	+1.2
3,408,842	+	dusB	b3260	0.56	-0.1
3,408,847	+	dusB	b3260	0.56	-0.9
3,408,847	+	dusB	b3260	0.56	-1.5
3,408,909	-	dusB	b3260	0.63	+0.7
3,408,912	-	dusB	b3260	0.63	+0.9
3,408,942	+	dusB	b3260	0.66	+0.2
3,408,943	-	dusB	b3260	0.66	-1.2
3,408,943	-	dusB	b3260	0.66	-1.2
3,408,945	+	dusB	b3260	0.67	-0.3
3,408,945	+	dusB	b3260	0.67	-0.1
3,408,952	+	dusB	b3260	0.67	+0.1
3,408,953	-	dusB	b3260	0.67	+0.0
3,408,961	+	dusB	b3260	0.68	+0.5
3,408,988	-	dusB	b3260	0.71	+0.6
3,408,991	+	dusB	b3260	0.71	-0.5
3,409,134	-	dusB	b3260	0.86	-0.5
3,409,431	+	fis	b3261	0.46	-1.5
3,409,435	-	fis	b3261	0.48	+0.6
3,409,442	+	fis	b3261	0.50	-0.5
3,409,446	-	fis	b3261	0.52	+1.4
3,409,447	+	fis	b3261	0.52	-1.0
3,409,450	-	fis	b3261	0.53	-0.8
3,409,464	+	fis	b3261	0.58	+0.0
3,409,478	+	fis	b3261	0.62	-1.3
3,409,493	+	fis	b3261	0.67	-1.7
3,409,493	+	fis	b3261	0.67	-1.0
3,409,514	+	fis	b3261	0.74	+0.6
3,409,524	+	fis	b3261	0.78	-2.4
3,409,524	+	fis	b3261	0.78	+0.6
3,409,733	+				-0.8
3,409,828	-	yhdJ	b3262	0.17	+0.2
3,409,873	-	yhdJ	b3262	0.22	+0.7
3,409,879	+	yhdJ	b3262	0.23	+0.8
3,409,879	+	yhdJ	b3262	0.23	+0.2
3,409,895	-	yhdJ	b3262	0.25	+0.9
3,409,915	+	yhdJ	b3262	0.27	+0.0
3,409,968	+	yhdJ	b3262	0.33	+0.8
3,410,048	-	yhdJ	b3262	0.42	+0.5
3,410,097	+	yhdJ	b3262	0.48	-0.3
3,410,108	+	yhdJ	b3262	0.49	+0.4
3,410,168	+	yhdJ	b3262	0.56	+0.2
3,410,186	-	yhdJ	b3262	0.58	+0.0
3,410,186	-	yhdJ	b3262	0.58	+0.3
3,410,316	+	yhdJ	b3262	0.72	-0.3
3,410,334	-	yhdJ	b3262	0.74	+2.9
3,410,423	+	yhdJ	b3262	0.85	-0.3
3,410,460	+	yhdJ	b3262	0.89	+0.8
3,410,464	+	yhdJ	b3262	0.89	+0.3
3,410,565	+				-0.6
3,410,565	+				+0.2
3,410,565	+				+0.2
3,410,603	+				+0.8
3,410,613	+				-0.5
3,410,616	-				+0.4
3,410,618	+				-0.1
3,410,629	+				+0.0
3,410,631	-				+1.1
3,410,631	-				-0.9
3,410,633	+				+0.6
3,410,633	+				+0.2
3,410,633	+				+0.6
3,410,636	-				-0.5
3,410,653	+				+1.0
3,410,653	+				+0.4
3,410,654	+				+0.3
3,410,661	-	yhdU	b3263	0.10	-0.1
3,410,677	-	yhdU	b3263	0.19	+0.7
3,410,678	-	yhdU	b3263	0.19	+0.1
3,410,678	-	yhdU	b3263	0.19	+0.6
3,410,679	+	yhdU	b3263	0.20	+0.5
3,410,693	+	yhdU	b3263	0.28	+0.2
3,410,698	+	yhdU	b3263	0.31	-1.2
3,410,712	-	yhdU	b3263	0.38	-0.5
3,410,716	+	yhdU	b3263	0.41	+0.3
3,410,716	+	yhdU	b3263	0.41	+0.5
3,410,764	+	yhdU	b3263	0.67	-0.2
3,410,764	+	yhdU	b3263	0.67	-0.3
3,410,764	+	yhdU	b3263	0.67	-0.7
3,410,772	-	yhdU	b3263	0.72	+2.9
3,410,772	-	yhdU	b3263	0.72	+2.9
3,410,778	+	yhdU	b3263	0.75	+0.1
3,410,788	+	yhdU	b3263	0.81	-0.7
3,410,788	+	yhdU	b3263	0.81	-0.3
3,410,788	+	yhdU	b3263	0.81	+0.4
3,410,788	+	yhdU	b3263	0.81	-0.2
3,410,880	+				+2.1
3,410,896	+	envR	b3264	0.11	+0.5
3,410,901	+	envR	b3264	0.11	+1.3
3,410,911	+	envR	b3264	0.13	+1.2
3,410,968	-	envR	b3264	0.22	+2.9
3,411,043	+	envR	b3264	0.33	+1.9
3,411,062	+	envR	b3264	0.36	+2.9
3,411,079	+	envR	b3264	0.38	+2.9
3,411,114	+	envR	b3264	0.44	+0.6
3,411,122	-	envR	b3264	0.45	+2.9
3,411,231	-	envR	b3264	0.61	+0.6
3,411,243	-	envR	b3264	0.63	-0.3
3,411,249	-	envR	b3264	0.64	-0.2
3,411,250	-	envR	b3264	0.64	+0.4
3,411,250	-	envR	b3264	0.64	-0.1
3,411,252	+	envR	b3264	0.64	+2.9
3,411,260	-	envR	b3264	0.66	+0.2
3,411,260	-	envR	b3264	0.66	-0.1
3,411,293	+	envR	b3264	0.71	+1.9
3,411,298	-	envR	b3264	0.71	+0.6
3,411,298	-	envR	b3264	0.71	-0.2
3,411,306	-	envR	b3264	0.73	+1.3
3,411,369	-	envR	b3264	0.82	+0.4
3,411,397	+	envR	b3264	0.86	+0.5
3,411,404	+	envR	b3264	0.87	+0.1
3,411,410	+	envR	b3264	0.88	+1.5
3,411,442	+				+0.1
3,411,442	+				+2.1
3,411,450	+				+1.9
3,411,452	+				+1.3
3,411,455	+				+2.9