Strain Fitness in Escherichia coli BW25113 around b3059

Experiment: Ying_all64 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 2
3,201,765	-	bacA	b3057	0.53	+0.0
3,201,880	+	bacA	b3057	0.67	+0.4
3,201,970	-	bacA	b3057	0.78	+0.0
3,201,978	-	bacA	b3057	0.79	-0.1
3,201,995	-	bacA	b3057	0.81	+0.4
3,202,065	-	bacA	b3057	0.89	-0.4
3,202,069	-	bacA	b3057	0.90	-0.1
3,202,069	-	bacA	b3057	0.90	+0.1
3,202,081	-				+0.3
3,202,081	-				-1.0
3,202,136	+				+0.4
3,202,136	+				+0.9
3,202,139	+				-0.5
3,202,187	+				+1.3
3,202,219	-				-0.3
3,202,602	-				-2.3
3,202,644	-				+0.2
3,202,712	+				+0.3
3,202,878	+	ygiH	b3059	0.26	+0.4
3,202,878	+	ygiH	b3059	0.26	+0.6
3,202,968	-	ygiH	b3059	0.41	+0.8
3,203,057	+	ygiH	b3059	0.55	-0.1
3,203,072	-	ygiH	b3059	0.58	+0.2
3,203,128	-	ygiH	b3059	0.67	+0.3
3,203,143	+	ygiH	b3059	0.69	+0.1
3,203,235	-	ygiH	b3059	0.84	-0.2
3,203,306	-				+0.5
3,203,353	+				+0.0
3,203,356	-				+0.3
3,203,361	-				+0.6
3,203,368	-				-0.0
3,203,387	+				+0.0
3,203,387	+				+0.2
3,203,469	-	ygiP	b3060	0.13	-0.3
3,203,469	-	ygiP	b3060	0.13	-0.1
3,203,469	-	ygiP	b3060	0.13	-1.1
3,203,507	+	ygiP	b3060	0.17	-0.7
3,203,525	-	ygiP	b3060	0.19	-0.6
3,203,531	+	ygiP	b3060	0.20	+0.1
3,203,560	-	ygiP	b3060	0.23	+0.4
3,203,560	-	ygiP	b3060	0.23	-0.0
3,203,580	+	ygiP	b3060	0.25	-0.4
3,203,609	+	ygiP	b3060	0.28	+0.4
3,203,609	-	ygiP	b3060	0.28	+0.0
3,203,609	-	ygiP	b3060	0.28	-1.3
3,203,617	+	ygiP	b3060	0.29	-0.6
3,203,617	-	ygiP	b3060	0.29	+0.5
3,203,617	-	ygiP	b3060	0.29	+0.4
3,203,618	+	ygiP	b3060	0.29	+1.0
3,203,618	+	ygiP	b3060	0.29	+0.7
3,203,626	-	ygiP	b3060	0.30	-0.4
3,203,642	+	ygiP	b3060	0.32	+0.3
3,203,642	+	ygiP	b3060	0.32	+0.4
3,203,650	+	ygiP	b3060	0.33	+0.2
3,203,650	+	ygiP	b3060	0.33	-0.3
3,203,666	+	ygiP	b3060	0.34	+1.0
3,203,666	+	ygiP	b3060	0.34	+0.1
3,203,673	+	ygiP	b3060	0.35	-0.8
3,203,674	+	ygiP	b3060	0.35	+0.7
3,203,674	+	ygiP	b3060	0.35	-0.2
3,203,674	-	ygiP	b3060	0.35	-0.8
3,203,674	-	ygiP	b3060	0.35	+0.5
3,203,674	-	ygiP	b3060	0.35	-0.3
3,203,677	+	ygiP	b3060	0.35	+0.5
3,203,682	-	ygiP	b3060	0.36	-0.0
3,203,685	+	ygiP	b3060	0.36	+0.3
3,203,685	+	ygiP	b3060	0.36	+0.7
3,203,685	+	ygiP	b3060	0.36	+0.5
3,203,685	+	ygiP	b3060	0.36	+0.7
3,203,689	+	ygiP	b3060	0.37	-0.6
3,203,689	+	ygiP	b3060	0.37	-0.3
3,203,695	+	ygiP	b3060	0.37	-0.4
3,203,695	-	ygiP	b3060	0.37	+0.7
3,203,696	+	ygiP	b3060	0.38	-0.4
3,203,698	+	ygiP	b3060	0.38	-0.2
3,203,698	+	ygiP	b3060	0.38	+0.2
3,203,712	+	ygiP	b3060	0.39	+0.1
3,203,720	+	ygiP	b3060	0.40	-0.1
3,203,720	+	ygiP	b3060	0.40	+0.1
3,203,720	+	ygiP	b3060	0.40	-0.3
3,203,721	+	ygiP	b3060	0.40	-0.3
3,203,728	-	ygiP	b3060	0.41	+0.8
3,203,728	-	ygiP	b3060	0.41	+2.8
3,203,755	+	ygiP	b3060	0.44	-0.2
3,203,757	+	ygiP	b3060	0.44	-0.4
3,203,757	+	ygiP	b3060	0.44	-0.1
3,203,861	-	ygiP	b3060	0.55	-0.2
3,203,861	-	ygiP	b3060	0.55	+1.5
3,203,907	-	ygiP	b3060	0.60	+0.7
3,203,907	-	ygiP	b3060	0.60	-0.7
3,203,908	-	ygiP	b3060	0.60	-0.7
3,203,908	-	ygiP	b3060	0.60	-1.0
3,203,919	-	ygiP	b3060	0.61	-0.2
3,203,919	-	ygiP	b3060	0.61	-0.3
3,203,927	+	ygiP	b3060	0.62	+0.4
3,203,932	-	ygiP	b3060	0.63	+0.2
3,203,932	-	ygiP	b3060	0.63	+0.5
3,203,933	-	ygiP	b3060	0.63	-0.3
3,203,933	-	ygiP	b3060	0.63	+1.3
3,203,935	-	ygiP	b3060	0.63	-0.1
3,203,935	-	ygiP	b3060	0.63	+0.5
3,203,940	-	ygiP	b3060	0.64	+0.8
3,203,940	-	ygiP	b3060	0.64	-0.3
3,203,940	-	ygiP	b3060	0.64	-0.9
3,203,940	-	ygiP	b3060	0.64	+0.4
3,203,947	+	ygiP	b3060	0.64	+0.8
3,203,947	+	ygiP	b3060	0.64	+1.3
3,203,947	+	ygiP	b3060	0.64	+2.8
3,203,947	+	ygiP	b3060	0.64	+2.3
3,203,953	-	ygiP	b3060	0.65	+0.5
3,203,953	-	ygiP	b3060	0.65	+0.1
3,203,953	-	ygiP	b3060	0.65	-0.4
3,203,953	-	ygiP	b3060	0.65	+0.0
3,203,953	-	ygiP	b3060	0.65	+0.4
3,203,953	-	ygiP	b3060	0.65	+0.8
3,203,953	-	ygiP	b3060	0.65	+1.7
3,203,953	-	ygiP	b3060	0.65	+0.1
3,203,955	-	ygiP	b3060	0.65	+0.8
3,203,986	-	ygiP	b3060	0.69	-0.3
3,203,986	-	ygiP	b3060	0.69	-0.2
3,203,987	-	ygiP	b3060	0.69	+0.2
3,203,987	-	ygiP	b3060	0.69	+0.2
3,203,987	-	ygiP	b3060	0.69	+1.1
3,204,012	-	ygiP	b3060	0.71	+0.2
3,204,012	-	ygiP	b3060	0.71	+0.1
3,204,021	-	ygiP	b3060	0.72	+0.5
3,204,021	-	ygiP	b3060	0.72	+0.6
3,204,021	-	ygiP	b3060	0.72	+0.2
3,204,022	-	ygiP	b3060	0.72	+1.5
3,204,022	-	ygiP	b3060	0.72	+0.4
3,204,023	-	ygiP	b3060	0.73	-0.1
3,204,029	-	ygiP	b3060	0.73	+0.1
3,204,034	-	ygiP	b3060	0.74	+1.0
3,204,046	-	ygiP	b3060	0.75	+0.6
3,204,085	+	ygiP	b3060	0.79	-0.0
3,204,093	-	ygiP	b3060	0.80	-0.4
3,204,117	+	ygiP	b3060	0.83	+0.6
3,204,173	+	ygiP	b3060	0.89	+1.0
3,204,202	-				-0.6
3,204,202	-				-0.1
3,204,257	+				-1.1
3,204,263	-				+0.8
3,204,270	-				+0.5
3,204,275	-				+0.0
3,204,278	-				-1.2
3,204,294	+				-0.9
3,204,294	+				-0.6
3,204,294	+				-1.0
3,204,302	-				+0.5
3,204,302	-				+0.0
3,204,316	+				+1.6
3,204,319	-				-0.4