Strain Fitness in Escherichia coli BW25113 around b1567

Experiment: Ying_all64 rep C; time point 2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntydfV and flxA are separated by 202 nucleotidesflxA and intK are separated by 436 nucleotidesintK and ydfX are separated by 1 nucleotidesydfX and dicC overlap by 17 nucleotidesdicC and dicA are separated by 83 nucleotides b1565: ydfV - Qin prophage; predicted protein (NCBI), at 1,643,921 to 1,644,226 ydfV b1566: flxA - Qin prophage; predicted protein (NCBI), at 1,644,429 to 1,644,761 flxA b1567: intK - Qin prophage; predicted protein (RefSeq), at 1,645,198 to 1,645,380 intK b1568: ydfX - Qin prophage; predicted protein (RefSeq), at 1,645,382 to 1,645,660 ydfX b1569: dicC - Qin prophage; DNA-binding transcriptional regulator for DicB (NCBI), at 1,645,644 to 1,645,874 dicC b1570: dicA - Qin prophage; predicted regulator for DicB (NCBI), at 1,645,958 to 1,646,365 dicA Position (kb) 1645 1646Strain fitness (log2 ratio) -2 -1 0 1 2at 1644.248 kb on - strandat 1644.258 kb on - strandat 1644.283 kb on + strandat 1644.290 kb on + strandat 1644.306 kb on + strandat 1644.480 kb on + strand, within flxAat 1644.647 kb on + strand, within flxAat 1644.647 kb on + strand, within flxAat 1644.656 kb on + strand, within flxAat 1644.690 kb on + strand, within flxAat 1644.756 kb on + strandat 1644.756 kb on + strandat 1644.758 kb on + strandat 1644.774 kb on + strandat 1644.787 kb on - strandat 1644.792 kb on - strandat 1644.809 kb on - strandat 1644.809 kb on - strandat 1644.870 kb on - strandat 1644.870 kb on - strandat 1644.870 kb on - strandat 1644.890 kb on - strandat 1644.918 kb on - strandat 1644.986 kb on - strandat 1645.019 kb on + strandat 1645.019 kb on + strandat 1645.027 kb on - strandat 1645.027 kb on - strandat 1645.038 kb on - strandat 1645.060 kb on + strandat 1645.062 kb on + strandat 1645.087 kb on + strandat 1645.116 kb on - strandat 1645.144 kb on + strandat 1645.145 kb on + strandat 1645.174 kb on - strandat 1645.176 kb on - strandat 1645.280 kb on + strand, within intKat 1645.288 kb on - strand, within intKat 1645.295 kb on + strand, within intKat 1645.408 kb on - strandat 1645.408 kb on - strandat 1645.546 kb on + strand, within ydfXat 1645.640 kb on + strandat 1645.640 kb on + strandat 1645.650 kb on - strandat 1645.725 kb on - strand, within dicCat 1645.725 kb on - strand, within dicCat 1645.940 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2
remove
1,644,248 - +2.2
1,644,258 - -0.4
1,644,283 + +0.2
1,644,290 + +0.2
1,644,306 + -0.2
1,644,480 + flxA b1566 0.15 +0.4
1,644,647 + flxA b1566 0.65 +0.1
1,644,647 + flxA b1566 0.65 -0.1
1,644,656 + flxA b1566 0.68 -1.9
1,644,690 + flxA b1566 0.78 +0.1
1,644,756 + +2.2
1,644,756 + -0.8
1,644,758 + -0.1
1,644,774 + +0.1
1,644,787 - +2.2
1,644,792 - +2.2
1,644,809 - -0.2
1,644,809 - +0.4
1,644,870 - -0.3
1,644,870 - -1.9
1,644,870 - +0.2
1,644,890 - -0.4
1,644,918 - +0.0
1,644,986 - +0.3
1,645,019 + +0.3
1,645,019 + -0.9
1,645,027 - -0.1
1,645,027 - +0.3
1,645,038 - -0.4
1,645,060 + +0.6
1,645,062 + +0.9
1,645,087 + +0.4
1,645,116 - +0.6
1,645,144 + -0.9
1,645,145 + +0.8
1,645,174 - +0.3
1,645,176 - +0.4
1,645,280 + intK b1567 0.45 +0.1
1,645,288 - intK b1567 0.49 +0.4
1,645,295 + intK b1567 0.53 +0.6
1,645,408 - +0.1
1,645,408 - +0.1
1,645,546 + ydfX b1568 0.59 +0.7
1,645,640 + +1.6
1,645,640 + -1.5
1,645,650 - -0.9
1,645,725 - dicC b1569 0.35 +0.4
1,645,725 - dicC b1569 0.35 -0.2
1,645,940 + -0.0

Or see this region's nucleotide sequence