Strain Fitness in Escherichia coli BW25113 around b1064
Experiment: Ying_all64 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Ying_all64 rep C; time point 2 |
---|---|---|---|---|---|
remove | |||||
1,121,636 | + | pyrC | b1062 | 0.81 | +0.4 |
1,121,641 | + | pyrC | b1062 | 0.82 | -0.0 |
1,121,668 | + | pyrC | b1062 | 0.84 | -0.4 |
1,121,668 | + | pyrC | b1062 | 0.84 | +0.1 |
1,121,689 | + | pyrC | b1062 | 0.86 | +1.0 |
1,121,689 | + | pyrC | b1062 | 0.86 | -0.0 |
1,121,694 | + | pyrC | b1062 | 0.87 | -0.4 |
1,121,793 | + | +0.6 | |||
1,121,793 | + | +0.6 | |||
1,122,106 | - | yceB | b1063 | 0.30 | +0.8 |
1,122,106 | - | yceB | b1063 | 0.30 | +0.4 |
1,122,256 | - | yceB | b1063 | 0.57 | -0.2 |
1,122,315 | + | yceB | b1063 | 0.68 | -0.1 |
1,122,325 | + | yceB | b1063 | 0.69 | +0.5 |
1,122,356 | + | yceB | b1063 | 0.75 | +0.8 |
1,122,356 | + | yceB | b1063 | 0.75 | -0.0 |
1,122,501 | + | +0.2 | |||
1,122,533 | + | -0.3 | |||
1,122,546 | - | -0.0 | |||
1,122,549 | - | -0.1 | |||
1,122,556 | + | -0.1 | |||
1,122,689 | + | +0.1 | |||
1,122,829 | - | grxB | b1064 | 0.31 | +0.1 |
1,122,942 | - | grxB | b1064 | 0.48 | +0.4 |
1,123,018 | - | grxB | b1064 | 0.60 | +0.2 |
1,123,099 | + | grxB | b1064 | 0.72 | +0.6 |
1,123,099 | + | grxB | b1064 | 0.72 | +0.5 |
1,123,099 | + | grxB | b1064 | 0.72 | +0.4 |
1,123,195 | - | grxB | b1064 | 0.87 | +0.4 |
1,123,274 | + | +0.3 | |||
1,123,322 | + | -0.8 | |||
1,123,322 | + | -0.3 | |||
1,123,329 | - | +0.5 | |||
1,123,443 | + | -0.5 | |||
1,123,891 | - | yceL | b1065 | 0.45 | +0.5 |
1,123,895 | - | yceL | b1065 | 0.46 | -0.7 |
1,123,978 | - | yceL | b1065 | 0.53 | +0.0 |
1,124,118 | + | yceL | b1065 | 0.64 | +0.4 |
1,124,126 | - | yceL | b1065 | 0.65 | -0.3 |
1,124,164 | - | yceL | b1065 | 0.68 | +0.0 |
1,124,215 | - | yceL | b1065 | 0.72 | +0.0 |
Or see this region's nucleotide sequence