Strain Fitness in Escherichia coli BW25113 around b2369

Experiment: Ying_all64 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntemrK and evgA are separated by 415 nucleotidesevgA and evgS are separated by 4 nucleotides b2368: emrK - EmrKY-TolC multidrug resistance efflux pump, membrane fusion protein component (NCBI), at 2,480,198 to 2,481,361 emrK b2369: evgA - DNA-binding response regulator in two-component regulatory system with EvgS (NCBI), at 2,481,777 to 2,482,391 evgA b2370: evgS - hybrid sensory histidine kinase in two-component regulatory system with EvgA (NCBI), at 2,482,396 to 2,485,989 evgS Position (kb) 2481 2482 2483Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2480.782 kb on - strand, within emrKat 2480.787 kb on + strand, within emrKat 2480.801 kb on + strand, within emrKat 2480.801 kb on + strand, within emrKat 2480.843 kb on + strand, within emrKat 2480.843 kb on + strand, within emrKat 2480.843 kb on + strand, within emrKat 2480.843 kb on + strand, within emrKat 2480.889 kb on + strand, within emrKat 2480.897 kb on - strand, within emrKat 2480.990 kb on - strand, within emrKat 2481.080 kb on - strand, within emrKat 2481.221 kb on - strand, within emrKat 2481.434 kb on - strandat 2481.444 kb on - strandat 2481.444 kb on - strandat 2481.450 kb on - strandat 2481.450 kb on - strandat 2481.463 kb on - strandat 2481.472 kb on - strandat 2481.485 kb on - strandat 2481.485 kb on - strandat 2481.515 kb on - strandat 2481.515 kb on - strandat 2481.515 kb on - strandat 2481.517 kb on - strandat 2481.521 kb on - strandat 2481.521 kb on - strandat 2481.647 kb on + strandat 2481.647 kb on + strandat 2481.650 kb on + strandat 2481.650 kb on + strandat 2481.666 kb on + strandat 2481.718 kb on + strandat 2481.718 kb on + strandat 2481.725 kb on + strandat 2481.726 kb on + strandat 2481.728 kb on + strandat 2481.734 kb on + strandat 2481.734 kb on + strandat 2481.742 kb on - strandat 2481.869 kb on + strand, within evgAat 2481.886 kb on + strand, within evgAat 2481.888 kb on + strand, within evgAat 2481.896 kb on + strand, within evgAat 2481.896 kb on + strand, within evgAat 2481.905 kb on + strand, within evgAat 2481.942 kb on + strand, within evgAat 2481.946 kb on + strand, within evgAat 2481.946 kb on + strand, within evgAat 2481.946 kb on + strand, within evgAat 2481.955 kb on + strand, within evgAat 2481.955 kb on + strand, within evgAat 2481.957 kb on + strand, within evgAat 2481.973 kb on + strand, within evgAat 2481.984 kb on + strand, within evgAat 2481.984 kb on + strand, within evgAat 2482.043 kb on + strand, within evgAat 2482.043 kb on + strand, within evgAat 2482.044 kb on + strand, within evgAat 2482.045 kb on + strand, within evgAat 2482.136 kb on + strand, within evgAat 2482.138 kb on + strand, within evgAat 2482.149 kb on + strand, within evgAat 2482.156 kb on - strand, within evgAat 2482.227 kb on + strand, within evgAat 2482.235 kb on + strand, within evgAat 2482.235 kb on + strand, within evgAat 2482.235 kb on + strand, within evgAat 2482.308 kb on + strand, within evgAat 2482.355 kb on + strandat 2482.433 kb on + strandat 2482.433 kb on + strandat 2482.464 kb on + strandat 2482.473 kb on - strandat 2482.488 kb on + strandat 2482.497 kb on + strandat 2482.502 kb on + strandat 2482.502 kb on + strandat 2482.503 kb on + strandat 2482.503 kb on + strandat 2482.503 kb on + strandat 2482.503 kb on + strandat 2482.507 kb on + strandat 2482.508 kb on + strandat 2482.508 kb on + strandat 2482.514 kb on + strandat 2482.517 kb on + strandat 2482.517 kb on + strandat 2482.579 kb on + strandat 2482.579 kb on + strandat 2482.586 kb on + strandat 2482.586 kb on + strandat 2482.597 kb on + strandat 2482.597 kb on + strandat 2482.600 kb on + strandat 2482.603 kb on + strandat 2482.605 kb on + strandat 2482.605 kb on + strandat 2482.605 kb on + strandat 2482.605 kb on + strandat 2482.605 kb on + strandat 2482.605 kb on + strandat 2482.605 kb on + strandat 2482.605 kb on + strandat 2482.605 kb on + strandat 2482.605 kb on + strandat 2482.616 kb on + strandat 2482.629 kb on + strandat 2482.740 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 2
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2,480,782 - emrK b2368 0.50 +1.5
2,480,787 + emrK b2368 0.51 +0.2
2,480,801 + emrK b2368 0.52 -0.0
2,480,801 + emrK b2368 0.52 +0.3
2,480,843 + emrK b2368 0.55 -0.5
2,480,843 + emrK b2368 0.55 +0.3
2,480,843 + emrK b2368 0.55 -0.1
2,480,843 + emrK b2368 0.55 -0.0
2,480,889 + emrK b2368 0.59 -0.1
2,480,897 - emrK b2368 0.60 +0.2
2,480,990 - emrK b2368 0.68 +2.5
2,481,080 - emrK b2368 0.76 +2.5
2,481,221 - emrK b2368 0.88 +1.5
2,481,434 - -0.3
2,481,444 - -0.9
2,481,444 - +0.9
2,481,450 - +0.5
2,481,450 - +0.5
2,481,463 - +0.6
2,481,472 - -0.6
2,481,485 - -0.7
2,481,485 - -0.2
2,481,515 - -0.1
2,481,515 - +0.8
2,481,515 - +0.9
2,481,517 - +0.3
2,481,521 - +0.9
2,481,521 - +2.5
2,481,647 + -0.2
2,481,647 + +0.4
2,481,650 + +0.3
2,481,650 + +0.0
2,481,666 + -0.5
2,481,718 + -0.1
2,481,718 + +0.9
2,481,725 + +0.9
2,481,726 + +1.5
2,481,728 + +1.5
2,481,734 + +0.9
2,481,734 + -0.9
2,481,742 - +2.5
2,481,869 + evgA b2369 0.15 +0.5
2,481,886 + evgA b2369 0.18 +2.5
2,481,888 + evgA b2369 0.18 +0.5
2,481,896 + evgA b2369 0.19 +0.9
2,481,896 + evgA b2369 0.19 +2.5
2,481,905 + evgA b2369 0.21 +0.0
2,481,942 + evgA b2369 0.27 +1.3
2,481,946 + evgA b2369 0.27 +2.0
2,481,946 + evgA b2369 0.27 +0.5
2,481,946 + evgA b2369 0.27 +0.3
2,481,955 + evgA b2369 0.29 +1.8
2,481,955 + evgA b2369 0.29 -0.2
2,481,957 + evgA b2369 0.29 +0.8
2,481,973 + evgA b2369 0.32 -0.6
2,481,984 + evgA b2369 0.34 +1.4
2,481,984 + evgA b2369 0.34 +0.6
2,482,043 + evgA b2369 0.43 +0.9
2,482,043 + evgA b2369 0.43 -0.1
2,482,044 + evgA b2369 0.43 +1.9
2,482,045 + evgA b2369 0.44 +1.9
2,482,136 + evgA b2369 0.58 +2.5
2,482,138 + evgA b2369 0.59 +0.5
2,482,149 + evgA b2369 0.60 +2.5
2,482,156 - evgA b2369 0.62 +2.5
2,482,227 + evgA b2369 0.73 +1.2
2,482,235 + evgA b2369 0.74 +1.5
2,482,235 + evgA b2369 0.74 +2.5
2,482,235 + evgA b2369 0.74 +1.5
2,482,308 + evgA b2369 0.86 +2.8
2,482,355 + +2.5
2,482,433 + +0.9
2,482,433 + +0.5
2,482,464 + +0.5
2,482,473 - +2.5
2,482,488 + +1.5
2,482,497 + +0.5
2,482,502 + +0.2
2,482,502 + -0.3
2,482,503 + +2.5
2,482,503 + +1.2
2,482,503 + +0.2
2,482,503 + -1.5
2,482,507 + -2.0
2,482,508 + +0.5
2,482,508 + +1.5
2,482,514 + -1.2
2,482,517 + +1.5
2,482,517 + +2.5
2,482,579 + -0.1
2,482,579 + +1.5
2,482,586 + +0.9
2,482,586 + -0.7
2,482,597 + -1.1
2,482,597 + +2.5
2,482,600 + +1.5
2,482,603 + -0.3
2,482,605 + +0.3
2,482,605 + +1.7
2,482,605 + +0.6
2,482,605 + +0.8
2,482,605 + +2.1
2,482,605 + -1.6
2,482,605 + +0.8
2,482,605 + -1.5
2,482,605 + +0.9
2,482,605 + +1.5
2,482,616 + -0.3
2,482,629 + -0.6
2,482,740 + +2.5

Or see this region's nucleotide sequence