Strain Fitness in Escherichia coli BW25113 around b2005

Experiment: Ying_all64 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 2
2,074,622	+	yeeS	b2002	0.65	+1.5
2,074,649	+	yeeS	b2002	0.71	+0.2
2,074,657	-	yeeS	b2002	0.73	-0.1
2,074,690	+	yeeS	b2002	0.80	-0.5
2,074,696	+	yeeS	b2002	0.81	-0.8
2,074,696	-	yeeS	b2002	0.81	-0.0
2,074,782	+				+0.3
2,074,865	+	yeeT	b2003	0.11	+0.5
2,074,920	-	yeeT	b2003	0.36	-0.1
2,074,949	-	yeeT	b2003	0.49	-0.5
2,074,949	-	yeeT	b2003	0.49	+0.1
2,075,051	+				+0.8
2,075,051	+				-0.3
2,075,051	+				-0.6
2,075,199	-	yeeU	b2004	0.17	-0.8
2,075,199	-	yeeU	b2004	0.17	+0.3
2,075,201	+	yeeU	b2004	0.18	-0.2
2,075,209	+	yeeU	b2004	0.20	+0.1
2,075,302	+	yeeU	b2004	0.45	+0.5
2,075,407	+	yeeU	b2004	0.73	-0.8
2,075,416	+	yeeU	b2004	0.76	+0.5
2,075,452	-	yeeU	b2004	0.86	+0.4
2,075,452	-	yeeU	b2004	0.86	+0.5
2,075,642	+	yeeV	b2005	0.13	+0.4
2,075,642	+	yeeV	b2005	0.13	+0.7
2,075,827	+	yeeV	b2005	0.62	-0.3
2,075,848	-	yeeV	b2005	0.68	+0.8
2,075,848	-	yeeV	b2005	0.68	+0.5
2,075,933	+				+0.6
2,076,005	+	yeeW	b2006	0.24	+0.0
2,076,019	+	yeeW	b2006	0.33	-0.2
2,076,019	+	yeeW	b2006	0.33	-0.4
2,076,081	+	yeeW	b2006	0.70	-0.6
2,076,111	-	yeeW	b2006	0.88	-0.1
2,076,111	-	yeeW	b2006	0.88	+0.6
2,076,134	+				+0.5
2,076,134	+				+0.2
2,076,161	-				+0.4
2,076,161	-				-0.3
2,076,178	-				-0.6
2,076,184	-				-0.5
2,076,251	+				+0.7
2,076,332	-				+0.0
2,076,415	-				+0.0
2,076,436	+				+0.3
2,076,436	+				+0.4
2,076,462	+				+0.3
2,076,462	+				+0.2
2,076,549	-				+0.3
2,076,611	+	yoeD	b4642	0.29	-0.0
2,076,670	-	yoeD	b4642	0.75	+0.4
2,076,697	+				-0.3
2,076,881	-	yoeF	b4538	0.60	-0.6
2,076,886	-	yoeF	b4538	0.62	+0.4