Strain Fitness in Escherichia coli BW25113 around b1879

Experiment: Ying_all64 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 2
1,960,031	+				+2.3
1,960,035	+				+0.7
1,960,035	+				+1.7
1,960,040	+				+1.0
1,960,040	+				+1.3
1,960,065	+	yecT	b1877	0.14	+2.3
1,960,067	-	yecT	b1877	0.15	-0.6
1,960,079	-	yecT	b1877	0.17	+0.7
1,960,079	-	yecT	b1877	0.17	-0.0
1,960,120	+	yecT	b1877	0.25	+1.7
1,960,129	+	yecT	b1877	0.27	+2.3
1,960,144	+	yecT	b1877	0.30	-0.7
1,960,274	-	yecT	b1877	0.57	-0.2
1,960,274	-	yecT	b1877	0.57	-0.7
1,960,357	+	yecT	b1877	0.74	-0.7
1,960,358	+	yecT	b1877	0.74	+2.3
1,960,372	-	yecT	b1877	0.77	-1.4
1,960,390	+	yecT	b1877	0.81	-0.3
1,960,390	+	yecT	b1877	0.81	-0.0
1,960,391	+	yecT	b1877	0.81	-0.5
1,960,431	+	yecT	b1877	0.89	+2.3
1,960,431	+	yecT	b1877	0.89	+0.7
1,960,439	+				-1.1
1,960,511	-				+0.8
1,960,511	-				+0.1
1,960,560	-				+0.1
1,960,646	-	flhE	b1878	0.11	-0.4
1,960,680	-	flhE	b1878	0.19	-0.2
1,960,723	-	flhE	b1878	0.30	+0.6
1,960,723	-	flhE	b1878	0.30	-0.3
1,960,813	+	flhE	b1878	0.53	+0.9
1,960,844	-	flhE	b1878	0.61	-0.9
1,960,846	-	flhE	b1878	0.62	-0.1
1,960,846	-	flhE	b1878	0.62	-2.4
1,960,882	+	flhE	b1878	0.71	+0.4
1,960,882	+	flhE	b1878	0.71	-0.0
1,960,988	-				-0.2
1,961,060	-				-0.5
1,961,060	-				+0.3
1,961,071	-				+0.4
1,961,144	+				+0.4
1,961,162	-				+0.3
1,961,264	+	flhA	b1879	0.13	+2.4
1,961,329	-	flhA	b1879	0.16	-0.1
1,961,415	-	flhA	b1879	0.20	+0.5
1,961,422	+	flhA	b1879	0.20	+0.3
1,961,456	+	flhA	b1879	0.22	+0.1
1,961,513	+	flhA	b1879	0.25	+1.2
1,961,576	-	flhA	b1879	0.28	+0.0
1,961,576	-	flhA	b1879	0.28	+0.4
1,961,623	+	flhA	b1879	0.30	+0.7
1,961,644	-	flhA	b1879	0.31	-0.2
1,961,967	-	flhA	b1879	0.47	+0.1
1,962,000	+	flhA	b1879	0.48	+0.6
1,962,040	-	flhA	b1879	0.50	-0.2
1,962,040	-	flhA	b1879	0.50	+0.8
1,962,040	-	flhA	b1879	0.50	-0.2
1,962,154	+	flhA	b1879	0.56	-0.2
1,962,257	+	flhA	b1879	0.61	-0.0
1,962,265	-	flhA	b1879	0.61	-0.3
1,962,265	-	flhA	b1879	0.61	+1.2
1,962,513	+	flhA	b1879	0.73	+0.7
1,962,513	+	flhA	b1879	0.73	+0.4
1,962,958	-				-0.4
1,963,140	-				-0.7
1,963,140	-				+0.6
1,963,206	+	flhB	b1880	0.12	+0.4
1,963,214	-	flhB	b1880	0.13	+0.0
1,963,214	-	flhB	b1880	0.13	+0.5
1,963,245	+	flhB	b1880	0.15	-0.7
1,963,349	-	flhB	b1880	0.25	+0.5
1,963,501	-	flhB	b1880	0.38	+0.5
1,963,599	+	flhB	b1880	0.46	+0.4
1,963,636	-	flhB	b1880	0.50	-0.8
1,963,647	-	flhB	b1880	0.50	+0.3
1,963,647	-	flhB	b1880	0.50	+0.2
1,963,705	-	flhB	b1880	0.56	+0.1
1,963,946	+	flhB	b1880	0.77	-0.7
1,964,064	-	flhB	b1880	0.87	+0.2