Strain Fitness in Escherichia coli BW25113 around b0730
Experiment: Ying_all64 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Ying_all64 rep B; time point 2 |
---|---|---|---|---|---|
remove | |||||
763,625 | + | sucD | b0729 | 0.26 | -1.1 |
763,625 | + | sucD | b0729 | 0.26 | +0.3 |
763,712 | + | sucD | b0729 | 0.36 | -1.1 |
763,712 | + | sucD | b0729 | 0.36 | -0.6 |
763,773 | + | sucD | b0729 | 0.43 | -0.9 |
763,871 | - | sucD | b0729 | 0.54 | -0.0 |
763,901 | + | sucD | b0729 | 0.57 | -0.6 |
764,252 | - | -0.5 | |||
764,279 | + | -0.1 | |||
764,302 | + | -1.9 | |||
764,302 | + | -0.7 | |||
764,311 | + | -0.0 | |||
764,319 | + | -0.3 | |||
764,349 | + | -0.0 | |||
764,480 | + | mngR | b0730 | 0.14 | +0.6 |
764,480 | + | mngR | b0730 | 0.14 | -0.0 |
764,515 | + | mngR | b0730 | 0.19 | +1.0 |
764,515 | + | mngR | b0730 | 0.19 | +2.2 |
764,515 | + | mngR | b0730 | 0.19 | +1.7 |
764,515 | + | mngR | b0730 | 0.19 | +2.5 |
764,645 | + | mngR | b0730 | 0.37 | -0.9 |
764,668 | + | mngR | b0730 | 0.40 | -0.2 |
764,811 | + | mngR | b0730 | 0.60 | +0.9 |
765,279 | + | +0.4 | |||
765,424 | + | mngA | b0731 | 0.11 | +0.3 |
765,590 | + | mngA | b0731 | 0.19 | -0.8 |
765,590 | + | mngA | b0731 | 0.19 | +0.4 |
765,674 | + | mngA | b0731 | 0.24 | +0.0 |
765,674 | - | mngA | b0731 | 0.24 | -0.3 |
765,675 | - | mngA | b0731 | 0.24 | +0.2 |
765,803 | - | mngA | b0731 | 0.30 | +0.0 |
765,803 | - | mngA | b0731 | 0.30 | +0.0 |
765,811 | - | mngA | b0731 | 0.31 | +0.1 |
765,811 | - | mngA | b0731 | 0.31 | +0.7 |
765,960 | - | mngA | b0731 | 0.38 | -0.5 |
766,059 | - | mngA | b0731 | 0.43 | +0.4 |
766,059 | - | mngA | b0731 | 0.43 | +0.3 |
766,066 | - | mngA | b0731 | 0.43 | -0.5 |
Or see this region's nucleotide sequence