Strain Fitness in Escherichia coli BW25113 around b3048

Experiment: Ying_all64 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 2
3,187,654	-				+0.6
3,187,658	+				-0.2
3,187,668	+				-0.2
3,187,669	+				-0.2
3,187,669	+				+0.1
3,187,669	+				-0.1
3,187,680	+				-0.5
3,187,681	-				+2.5
3,187,684	+				+0.2
3,187,684	-				+2.0
3,187,691	+				+0.2
3,187,700	-				+1.5
3,187,700	-				+2.5
3,187,704	+				+0.6
3,187,723	+				+1.5
3,187,723	+				+1.2
3,187,735	+				-0.4
3,187,748	+				+0.1
3,187,750	+				+0.6
3,187,750	+				-0.0
3,187,750	+				-0.3
3,187,750	+				+0.7
3,187,751	+				+0.3
3,187,751	+				-0.4
3,187,751	+				+0.1
3,187,751	+				+0.6
3,187,753	+				-1.0
3,187,753	+				-0.3
3,187,758	+				+0.5
3,187,763	+				+0.1
3,187,763	+				-0.0
3,187,771	+				+0.2
3,187,773	+				+0.4
3,187,784	+				+0.0
3,187,784	+				+0.1
3,187,827	+				-0.5
3,187,827	+				-0.8
3,187,828	+				-0.4
3,187,828	+				-0.3
3,187,828	+				+0.2
3,187,842	+				-0.2
3,187,940	+				+0.5
3,187,941	-				+2.1
3,187,945	+				+4.1
3,187,945	+				+2.5
3,187,948	-				-0.7
3,187,948	-				-0.3
3,187,948	-				+0.5
3,187,955	+				+1.5
3,187,960	-				-0.0
3,187,960	-				+0.5
3,187,962	-				+1.5
3,187,962	-				+1.2
3,187,964	+				+2.5
3,187,969	+				+1.5
3,187,972	-				-1.2
3,187,972	-				-0.6
3,187,972	-				+1.1
3,187,976	-				+0.8
3,187,976	-				-0.3
3,187,977	-				+0.5
3,187,986	-	yqiH	b3047	0.11	+1.8
3,187,986	-	yqiH	b3047	0.11	+0.5
3,187,992	+	yqiH	b3047	0.12	-1.3
3,187,992	+	yqiH	b3047	0.12	-0.3
3,187,992	-	yqiH	b3047	0.12	+2.5
3,188,010	+	yqiH	b3047	0.14	+2.0
3,188,010	+	yqiH	b3047	0.14	+1.5
3,188,028	-	yqiH	b3047	0.17	+0.2
3,188,032	+	yqiH	b3047	0.17	+2.5
3,188,074	+	yqiH	b3047	0.23	+2.5
3,188,077	-	yqiH	b3047	0.23	-0.0
3,188,131	+	yqiH	b3047	0.30	+1.5
3,188,134	+	yqiH	b3047	0.31	+1.5
3,188,135	+	yqiH	b3047	0.31	+2.5
3,188,264	-	yqiH	b3047	0.48	-0.2
3,188,286	+	yqiH	b3047	0.51	-0.3
3,188,293	+	yqiH	b3047	0.52	-0.1
3,188,293	+	yqiH	b3047	0.52	-0.1
3,188,294	-	yqiH	b3047	0.52	+0.2
3,188,296	-	yqiH	b3047	0.52	-0.9
3,188,296	-	yqiH	b3047	0.52	+1.2
3,188,298	-	yqiH	b3047	0.53	+2.5
3,188,298	-	yqiH	b3047	0.53	+0.5
3,188,343	-	yqiH	b3047	0.59	+2.5
3,188,346	+	yqiH	b3047	0.59	+0.5
3,188,766	-	yqiI	b3048	0.11	+2.6
3,188,811	+	yqiI	b3048	0.15	+2.6
3,188,868	+	yqiI	b3048	0.20	+2.6
3,188,871	-	yqiI	b3048	0.20	+0.2
3,188,882	-	yqiI	b3048	0.21	+2.6
3,188,884	-	yqiI	b3048	0.22	+2.6
3,189,328	+	yqiI	b3048	0.63	-0.2
3,189,398	-	yqiI	b3048	0.70	-0.3
3,189,403	-	yqiI	b3048	0.70	+0.2
3,189,413	+	yqiI	b3048	0.71	+0.9
3,189,413	+	yqiI	b3048	0.71	+0.7
3,189,436	+	yqiI	b3048	0.73	-0.4
3,189,436	+	yqiI	b3048	0.73	+0.6
3,189,436	+	yqiI	b3048	0.73	+0.3
3,189,436	+	yqiI	b3048	0.73	-1.7
3,189,436	+	yqiI	b3048	0.73	-0.3
3,189,436	+	yqiI	b3048	0.73	+0.4
3,189,436	+	yqiI	b3048	0.73	+0.3
3,189,436	+	yqiI	b3048	0.73	+1.0
3,189,436	+	yqiI	b3048	0.73	-0.4
3,189,436	+	yqiI	b3048	0.73	-0.0
3,189,436	+	yqiI	b3048	0.73	+0.1
3,189,436	+	yqiI	b3048	0.73	-0.2
3,189,436	+	yqiI	b3048	0.73	+0.7
3,189,436	+	yqiI	b3048	0.73	+1.0
3,189,436	+	yqiI	b3048	0.73	+1.3
3,189,436	+	yqiI	b3048	0.73	+1.0
3,189,436	+	yqiI	b3048	0.73	+0.4
3,189,436	+	yqiI	b3048	0.73	+1.4
3,189,436	+	yqiI	b3048	0.73	+0.1
3,189,436	+	yqiI	b3048	0.73	-0.1
3,189,436	+	yqiI	b3048	0.73	+0.1
3,189,441	+	yqiI	b3048	0.74	+0.1
3,189,441	+	yqiI	b3048	0.74	+0.4
3,189,441	+	yqiI	b3048	0.74	+0.5
3,189,441	+	yqiI	b3048	0.74	-0.0
3,189,451	+	yqiI	b3048	0.75	-0.2
3,189,451	+	yqiI	b3048	0.75	-1.3
3,189,495	+	yqiI	b3048	0.79	+0.2
3,189,516	-	yqiI	b3048	0.81	+2.6
3,189,516	-	yqiI	b3048	0.81	+1.0
3,189,537	-	yqiI	b3048	0.83	-0.0
3,189,539	+	yqiI	b3048	0.83	+1.2
3,189,555	-	yqiI	b3048	0.85	+0.7
3,189,581	-	yqiI	b3048	0.87	+0.6
3,189,601	+	yqiI	b3048	0.89	-0.3
3,189,609	-	yqiI	b3048	0.90	+0.2
3,189,612	-				+1.4
3,189,612	-				+0.6
3,189,621	+				+0.1
3,189,621	-				-0.0
3,189,621	-				-0.9
3,189,626	-				+1.2
3,189,628	+				-0.3
3,189,628	+				+0.1
3,189,628	+				+0.1
3,189,628	+				+0.2
3,189,628	+				+0.1
3,189,628	+				-0.5
3,189,628	+				-0.1
3,189,628	+				-0.1
3,189,628	+				-0.0
3,189,628	+				+0.2
3,189,628	+				-0.4
3,189,628	+				+0.5
3,189,628	+				+0.3
3,189,631	-				-0.1
3,189,633	+				+0.4
3,189,633	+				-0.0
3,189,634	-				+0.4
3,189,634	-				+0.4
3,189,636	-				-0.6
3,189,636	-				+0.0
3,189,636	-				-0.3
3,189,636	-				+0.3
3,189,636	-				+1.1
3,189,636	-				+1.2
3,189,636	-				+1.0
3,189,636	-				-0.6
3,189,636	-				+1.1
3,189,641	-				-0.5
3,189,645	+				-0.4
3,189,645	+				-1.8
3,189,652	-				-0.3
3,189,660	-				-0.3
3,189,665	+				+0.2
3,189,665	+				+0.2
3,189,669	+				-0.1
3,189,683	+				+0.0
3,189,684	+				-0.1
3,189,685	-				-0.5
3,189,755	+				-0.9
3,189,756	+				-0.1
3,189,760	-				+0.0
3,189,760	-				+0.4
3,189,762	-				-0.4
3,189,762	-				-0.3
3,189,762	-				-0.0
3,189,764	-				+0.1
3,189,764	-				-0.2
3,189,764	-				+0.4
3,189,764	-				+0.5
3,189,767	+				-0.9
3,189,775	-				+0.7
3,189,785	+	glgS	b3049	0.12	-0.3
3,189,793	-	glgS	b3049	0.16	+0.1
3,189,793	-	glgS	b3049	0.16	-0.6
3,189,793	-	glgS	b3049	0.16	-0.6
3,189,793	-	glgS	b3049	0.16	-0.0
3,189,793	-	glgS	b3049	0.16	+0.6
3,189,793	-	glgS	b3049	0.16	+0.1
3,189,794	+	glgS	b3049	0.16	+0.5
3,189,804	-	glgS	b3049	0.21	+0.7
3,189,809	-	glgS	b3049	0.24	+0.1
3,189,811	+	glgS	b3049	0.25	-0.1
3,189,811	+	glgS	b3049	0.25	-0.8
3,189,816	-	glgS	b3049	0.27	+0.5
3,189,851	+	glgS	b3049	0.45	-0.3
3,189,859	-	glgS	b3049	0.49	-0.9
3,189,861	-	glgS	b3049	0.50	-0.2
3,189,861	-	glgS	b3049	0.50	+0.1
3,189,891	+	glgS	b3049	0.65	+0.5
3,189,895	-	glgS	b3049	0.67	+0.3
3,189,899	-	glgS	b3049	0.69	-0.1
3,189,965	-				-0.2
3,189,967	-				-0.5
3,189,967	-				-0.2
3,189,979	+				-0.9
3,189,987	-				+0.1
3,189,990	+				+0.1
3,189,990	+				-0.6
3,189,995	-				-0.7
3,189,995	-				+0.3
3,190,023	+				-0.4
3,190,031	-				+0.1
3,190,031	-				+0.1
3,190,031	-				+0.4
3,190,036	-				+0.7
3,190,041	-				-0.3
3,190,041	-				+0.2
3,190,041	-				+1.0
3,190,047	+				-0.0
3,190,133	-				+0.1
3,190,138	-				-0.4
3,190,143	-				+0.4
3,190,143	-				-0.2
3,190,143	-				+0.0
3,190,150	+				-0.9
3,190,150	+				-0.4
3,190,207	+				-0.2
3,190,207	+				-0.1
3,190,215	+				-0.1
3,190,255	-				+0.6
3,190,276	+				+1.1
3,190,280	-				-0.5
3,190,284	-				+0.4
3,190,287	-				-0.0
3,190,289	-				-0.1
3,190,316	+	yqiJ	b3050	0.14	-0.1
3,190,318	+	yqiJ	b3050	0.14	+0.8
3,190,318	+	yqiJ	b3050	0.14	+3.0
3,190,324	+	yqiJ	b3050	0.15	+0.4
3,190,324	-	yqiJ	b3050	0.15	+1.1
3,190,324	-	yqiJ	b3050	0.15	+0.4
3,190,326	+	yqiJ	b3050	0.15	-0.1
3,190,326	+	yqiJ	b3050	0.15	+1.3
3,190,326	-	yqiJ	b3050	0.15	-0.8
3,190,326	-	yqiJ	b3050	0.15	+0.7
3,190,328	+	yqiJ	b3050	0.16	+0.0
3,190,328	+	yqiJ	b3050	0.16	-0.2
3,190,328	+	yqiJ	b3050	0.16	-0.9
3,190,328	+	yqiJ	b3050	0.16	+0.7
3,190,329	+	yqiJ	b3050	0.16	-1.1
3,190,329	-	yqiJ	b3050	0.16	-0.6
3,190,331	+	yqiJ	b3050	0.16	+0.2
3,190,332	+	yqiJ	b3050	0.16	+1.4
3,190,332	-	yqiJ	b3050	0.16	-0.5
3,190,333	+	yqiJ	b3050	0.16	+0.7
3,190,333	+	yqiJ	b3050	0.16	+1.2
3,190,334	+	yqiJ	b3050	0.17	-0.4
3,190,334	-	yqiJ	b3050	0.17	+0.1
3,190,336	-	yqiJ	b3050	0.17	-1.3
3,190,336	-	yqiJ	b3050	0.17	-1.0
3,190,342	-	yqiJ	b3050	0.18	-0.3
3,190,344	+	yqiJ	b3050	0.18	-0.0
3,190,344	+	yqiJ	b3050	0.18	+0.5
3,190,349	+	yqiJ	b3050	0.19	+0.8
3,190,349	+	yqiJ	b3050	0.19	+0.3
3,190,353	-	yqiJ	b3050	0.20	-0.2
3,190,353	-	yqiJ	b3050	0.20	+0.2
3,190,370	+	yqiJ	b3050	0.22	-0.5
3,190,370	+	yqiJ	b3050	0.22	+0.5
3,190,370	+	yqiJ	b3050	0.22	-1.4
3,190,372	-	yqiJ	b3050	0.23	-1.4
3,190,372	-	yqiJ	b3050	0.23	+0.1
3,190,378	-	yqiJ	b3050	0.23	+1.6
3,190,381	-	yqiJ	b3050	0.24	-0.0
3,190,381	-	yqiJ	b3050	0.24	+0.6
3,190,387	+	yqiJ	b3050	0.25	+1.0
3,190,387	+	yqiJ	b3050	0.25	-0.6
3,190,400	-	yqiJ	b3050	0.27	+0.7
3,190,425	+	yqiJ	b3050	0.31	+2.1
3,190,440	+	yqiJ	b3050	0.33	-0.3
3,190,442	+	yqiJ	b3050	0.34	-0.7
3,190,442	-	yqiJ	b3050	0.34	-0.1
3,190,443	+	yqiJ	b3050	0.34	+1.0
3,190,448	-	yqiJ	b3050	0.35	+0.4
3,190,448	-	yqiJ	b3050	0.35	+1.1
3,190,480	+	yqiJ	b3050	0.40	+0.3
3,190,482	+	yqiJ	b3050	0.40	+0.6
3,190,482	+	yqiJ	b3050	0.40	-0.1
3,190,482	+	yqiJ	b3050	0.40	-0.0
3,190,482	+	yqiJ	b3050	0.40	-0.2
3,190,482	+	yqiJ	b3050	0.40	+0.4
3,190,485	-	yqiJ	b3050	0.40	+0.8
3,190,486	-	yqiJ	b3050	0.41	+0.7
3,190,486	-	yqiJ	b3050	0.41	+0.2
3,190,490	+	yqiJ	b3050	0.41	-2.1
3,190,490	+	yqiJ	b3050	0.41	-0.4
3,190,492	-	yqiJ	b3050	0.42	+1.0
3,190,493	+	yqiJ	b3050	0.42	+0.9
3,190,493	+	yqiJ	b3050	0.42	-0.0
3,190,496	+	yqiJ	b3050	0.42	+0.1
3,190,498	+	yqiJ	b3050	0.43	-0.5
3,190,498	+	yqiJ	b3050	0.43	+0.1
3,190,498	+	yqiJ	b3050	0.43	+0.1
3,190,499	+	yqiJ	b3050	0.43	-0.4
3,190,500	+	yqiJ	b3050	0.43	-1.4
3,190,500	+	yqiJ	b3050	0.43	+1.0
3,190,502	-	yqiJ	b3050	0.43	+0.7
3,190,502	-	yqiJ	b3050	0.43	+0.6
3,190,507	-	yqiJ	b3050	0.44	-1.0
3,190,513	+	yqiJ	b3050	0.45	-0.0
3,190,513	+	yqiJ	b3050	0.45	+0.4
3,190,513	+	yqiJ	b3050	0.45	-0.5
3,190,513	+	yqiJ	b3050	0.45	+0.1
3,190,518	-	yqiJ	b3050	0.46	+2.6
3,190,521	+	yqiJ	b3050	0.46	-1.0
3,190,521	+	yqiJ	b3050	0.46	+0.5
3,190,521	+	yqiJ	b3050	0.46	-0.1
3,190,521	+	yqiJ	b3050	0.46	-0.3
3,190,521	+	yqiJ	b3050	0.46	+0.1
3,190,526	-	yqiJ	b3050	0.47	+0.2
3,190,532	+	yqiJ	b3050	0.48	-0.9
3,190,549	+	yqiJ	b3050	0.51	+0.1
3,190,549	+	yqiJ	b3050	0.51	+0.1
3,190,574	+	yqiJ	b3050	0.55	-0.4
3,190,611	+	yqiJ	b3050	0.60	-1.2
3,190,611	+	yqiJ	b3050	0.60	+0.2
3,190,615	+	yqiJ	b3050	0.61	+2.6
3,190,716	+	yqiJ	b3050	0.77	+2.6
3,190,716	+	yqiJ	b3050	0.77	+2.6