Strain Fitness in Escherichia coli BW25113 around b1483
Experiment: Ying_all64 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Ying_all64 rep A; time point 2 |
---|---|---|---|---|---|
remove | |||||
1,554,144 | - | b1481 | b1481 | 0.25 | -0.2 |
1,554,218 | + | b1481 | b1481 | 0.60 | +0.3 |
1,554,224 | - | b1481 | b1481 | 0.62 | +3.0 |
1,554,224 | - | b1481 | b1481 | 0.62 | +0.6 |
1,554,244 | - | b1481 | b1481 | 0.72 | +1.0 |
1,554,249 | + | b1481 | b1481 | 0.74 | +0.5 |
1,554,257 | - | b1481 | b1481 | 0.78 | +1.0 |
1,554,273 | + | b1481 | b1481 | 0.85 | +0.8 |
1,554,355 | - | +2.0 | |||
1,554,365 | + | -0.4 | |||
1,554,407 | + | +2.0 | |||
1,554,407 | + | +1.0 | |||
1,554,599 | + | +0.7 | |||
1,554,599 | + | -0.0 | |||
1,554,601 | + | +0.2 | |||
1,554,639 | - | -1.7 | |||
1,554,678 | + | +0.2 | |||
1,554,678 | - | +0.6 | |||
1,554,684 | - | -0.2 | |||
1,554,697 | + | osmC | b1482 | 0.11 | -0.9 |
1,554,707 | + | osmC | b1482 | 0.13 | +1.2 |
1,554,718 | + | osmC | b1482 | 0.16 | -0.4 |
1,554,723 | - | osmC | b1482 | 0.17 | +0.1 |
1,555,296 | + | ddpF | b1483 | 0.17 | +0.2 |
1,555,384 | - | ddpF | b1483 | 0.27 | +0.1 |
1,555,384 | - | ddpF | b1483 | 0.27 | +0.0 |
1,555,388 | + | ddpF | b1483 | 0.27 | +0.1 |
1,555,388 | + | ddpF | b1483 | 0.27 | +0.8 |
1,555,544 | - | ddpF | b1483 | 0.44 | -0.2 |
1,555,722 | + | ddpF | b1483 | 0.63 | +0.1 |
1,555,722 | + | ddpF | b1483 | 0.63 | +0.7 |
1,555,874 | - | ddpF | b1483 | 0.80 | +0.1 |
1,555,874 | - | ddpF | b1483 | 0.80 | +0.1 |
1,556,155 | - | ddpD | b1484 | 0.10 | +0.3 |
1,556,213 | - | ddpD | b1484 | 0.16 | +0.1 |
1,556,230 | + | ddpD | b1484 | 0.18 | -0.8 |
1,556,230 | + | ddpD | b1484 | 0.18 | -0.0 |
1,556,320 | - | ddpD | b1484 | 0.27 | -0.9 |
1,556,320 | - | ddpD | b1484 | 0.27 | -0.2 |
1,556,375 | + | ddpD | b1484 | 0.32 | +0.1 |
1,556,389 | + | ddpD | b1484 | 0.34 | -0.0 |
1,556,723 | + | ddpD | b1484 | 0.68 | -0.1 |
1,556,725 | - | ddpD | b1484 | 0.68 | -0.1 |
Or see this region's nucleotide sequence