Strain Fitness in Escherichia coli BW25113 around b1483

Experiment: Ying_all64 rep A; time point 2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntb1481 and osmC are separated by 344 nucleotidesosmC and ddpF are separated by 55 nucleotidesddpF and ddpD overlap by 8 nucleotidesddpD and ddpC overlap by 4 nucleotides b1481: b1481 - orf, hypothetical protein (VIMSS), at 1,554,089 to 1,554,304 b1481 b1482: osmC - osmotically inducible, stress-inducible membrane protein (NCBI), at 1,554,649 to 1,555,080 osmC b1483: ddpF - D-ala-D-ala transporter subunit (NCBI), at 1,555,136 to 1,556,062 ddpF b1484: ddpD - D-ala-D-ala transporter subunit (NCBI), at 1,556,055 to 1,557,041 ddpD b1485: ddpC - D-ala-D-ala transporter subunit (NCBI), at 1,557,038 to 1,557,934 ddpC Position (kb) 1555 1556 1557Strain fitness (log2 ratio) -1 0 1 2 3at 1554.144 kb on - strand, within b1481at 1554.218 kb on + strand, within b1481at 1554.224 kb on - strand, within b1481at 1554.224 kb on - strand, within b1481at 1554.244 kb on - strand, within b1481at 1554.249 kb on + strand, within b1481at 1554.257 kb on - strand, within b1481at 1554.273 kb on + strand, within b1481at 1554.355 kb on - strandat 1554.365 kb on + strandat 1554.407 kb on + strandat 1554.407 kb on + strandat 1554.599 kb on + strandat 1554.599 kb on + strandat 1554.601 kb on + strandat 1554.639 kb on - strandat 1554.678 kb on + strandat 1554.678 kb on - strandat 1554.684 kb on - strandat 1554.697 kb on + strand, within osmCat 1554.707 kb on + strand, within osmCat 1554.718 kb on + strand, within osmCat 1554.723 kb on - strand, within osmCat 1555.296 kb on + strand, within ddpFat 1555.384 kb on - strand, within ddpFat 1555.384 kb on - strand, within ddpFat 1555.388 kb on + strand, within ddpFat 1555.388 kb on + strand, within ddpFat 1555.544 kb on - strand, within ddpFat 1555.722 kb on + strand, within ddpFat 1555.722 kb on + strand, within ddpFat 1555.874 kb on - strand, within ddpFat 1555.874 kb on - strand, within ddpFat 1556.155 kb on - strand, within ddpDat 1556.213 kb on - strand, within ddpDat 1556.230 kb on + strand, within ddpDat 1556.230 kb on + strand, within ddpDat 1556.320 kb on - strand, within ddpDat 1556.320 kb on - strand, within ddpDat 1556.375 kb on + strand, within ddpDat 1556.389 kb on + strand, within ddpDat 1556.723 kb on + strand, within ddpDat 1556.725 kb on - strand, within ddpD

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 2
remove
1,554,144 - b1481 b1481 0.25 -0.2
1,554,218 + b1481 b1481 0.60 +0.3
1,554,224 - b1481 b1481 0.62 +3.0
1,554,224 - b1481 b1481 0.62 +0.6
1,554,244 - b1481 b1481 0.72 +1.0
1,554,249 + b1481 b1481 0.74 +0.5
1,554,257 - b1481 b1481 0.78 +1.0
1,554,273 + b1481 b1481 0.85 +0.8
1,554,355 - +2.0
1,554,365 + -0.4
1,554,407 + +2.0
1,554,407 + +1.0
1,554,599 + +0.7
1,554,599 + -0.0
1,554,601 + +0.2
1,554,639 - -1.7
1,554,678 + +0.2
1,554,678 - +0.6
1,554,684 - -0.2
1,554,697 + osmC b1482 0.11 -0.9
1,554,707 + osmC b1482 0.13 +1.2
1,554,718 + osmC b1482 0.16 -0.4
1,554,723 - osmC b1482 0.17 +0.1
1,555,296 + ddpF b1483 0.17 +0.2
1,555,384 - ddpF b1483 0.27 +0.1
1,555,384 - ddpF b1483 0.27 +0.0
1,555,388 + ddpF b1483 0.27 +0.1
1,555,388 + ddpF b1483 0.27 +0.8
1,555,544 - ddpF b1483 0.44 -0.2
1,555,722 + ddpF b1483 0.63 +0.1
1,555,722 + ddpF b1483 0.63 +0.7
1,555,874 - ddpF b1483 0.80 +0.1
1,555,874 - ddpF b1483 0.80 +0.1
1,556,155 - ddpD b1484 0.10 +0.3
1,556,213 - ddpD b1484 0.16 +0.1
1,556,230 + ddpD b1484 0.18 -0.8
1,556,230 + ddpD b1484 0.18 -0.0
1,556,320 - ddpD b1484 0.27 -0.9
1,556,320 - ddpD b1484 0.27 -0.2
1,556,375 + ddpD b1484 0.32 +0.1
1,556,389 + ddpD b1484 0.34 -0.0
1,556,723 + ddpD b1484 0.68 -0.1
1,556,725 - ddpD b1484 0.68 -0.1

Or see this region's nucleotide sequence