Strain Fitness in Escherichia coli BW25113 around b1426
Experiment: Ying_all64 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Ying_all64 rep A; time point 2 |
---|---|---|---|---|---|
remove | |||||
1,495,719 | + | mdoD | b1424 | 0.51 | -0.4 |
1,495,895 | - | mdoD | b1424 | 0.61 | -0.1 |
1,496,356 | - | mdoD | b1424 | 0.89 | -0.4 |
1,496,356 | - | mdoD | b1424 | 0.89 | +0.2 |
1,496,405 | + | -0.0 | |||
1,496,405 | + | -0.4 | |||
1,496,405 | + | -0.0 | |||
1,496,413 | - | +0.3 | |||
1,496,413 | - | +0.4 | |||
1,496,413 | - | -0.8 | |||
1,496,669 | - | +0.5 | |||
1,496,669 | - | +0.8 | |||
1,496,673 | - | -0.1 | |||
1,496,808 | - | ydcH | b1426 | 0.59 | +0.4 |
1,496,896 | - | +1.4 | |||
1,497,142 | - | rimL | b1427 | 0.33 | +0.5 |
1,497,231 | + | rimL | b1427 | 0.50 | +0.4 |
1,497,266 | + | rimL | b1427 | 0.56 | +0.5 |
1,497,328 | - | rimL | b1427 | 0.68 | +0.6 |
1,497,407 | + | rimL | b1427 | 0.82 | -0.3 |
1,497,636 | + | ydcK | b1428 | 0.15 | -1.7 |
1,497,662 | + | ydcK | b1428 | 0.17 | +0.6 |
1,497,751 | - | ydcK | b1428 | 0.26 | -0.3 |
1,497,751 | - | ydcK | b1428 | 0.26 | +0.4 |
1,497,751 | - | ydcK | b1428 | 0.26 | +0.4 |
1,497,765 | + | ydcK | b1428 | 0.28 | +0.2 |
1,497,766 | + | ydcK | b1428 | 0.28 | -0.0 |
1,497,792 | - | ydcK | b1428 | 0.30 | -0.3 |
1,497,805 | + | ydcK | b1428 | 0.32 | +0.5 |
1,497,829 | - | ydcK | b1428 | 0.34 | -0.3 |
Or see this region's nucleotide sequence