Strain Fitness in Escherichia coli BW25113 around b4202

Experiment: Ying_Others16 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep C; time point 1
4,423,415	+	rpsF	b4200	0.69	+1.3
4,423,552	+				-2.2
4,423,552	+				-0.9
4,423,563	+				-0.0
4,423,605	+	priB	b4201	0.20	+1.0
4,423,636	+	priB	b4201	0.30	+1.0
4,423,736	+	priB	b4201	0.61	+0.5
4,423,752	+	priB	b4201	0.66	+0.6
4,423,815	+	priB	b4201	0.86	+0.6
4,424,063	+	rpsR	b4202	0.88	-0.8
4,424,065	+	rpsR	b4202	0.89	+3.4
4,424,065	+	rpsR	b4202	0.89	-0.4
4,424,065	+	rpsR	b4202	0.89	+2.4
4,424,065	+	rpsR	b4202	0.89	-1.1
4,424,065	+	rpsR	b4202	0.89	+0.6
4,424,065	+	rpsR	b4202	0.89	-0.1
4,424,099	+				-0.2
4,424,214	+	rplI	b4203	0.18	-0.1
4,424,229	+	rplI	b4203	0.22	-0.7
4,424,229	+	rplI	b4203	0.22	+1.1
4,424,229	+	rplI	b4203	0.22	+0.1
4,424,229	+	rplI	b4203	0.22	+0.2
4,424,248	+	rplI	b4203	0.26	-0.2
4,424,360	+	rplI	b4203	0.51	+0.3
4,424,427	+	rplI	b4203	0.66	+0.2
4,424,501	+	rplI	b4203	0.82	+0.7
4,424,510	+	rplI	b4203	0.84	-3.0
4,424,523	+	rplI	b4203	0.87	+0.7
4,424,525	+	rplI	b4203	0.88	+1.9
4,424,592	+				+0.6
4,424,615	+				-0.7
4,424,669	+				+0.4
4,424,676	-				-0.4
4,424,677	-				+0.8
4,424,678	+				-0.4
4,424,684	-				-0.3
4,424,684	-				-0.2
4,424,684	-				+0.3
4,424,684	-				-1.0
4,424,690	+				+1.2
4,424,690	+				+0.4
4,424,705	+				+0.4
4,424,708	-				-1.2
4,424,722	-				-0.1
4,424,723	+				-0.6
4,424,727	-				-1.2
4,424,727	-				+0.1
4,424,728	+				+1.0
4,424,728	+				+0.3
4,424,728	-				+0.6
4,424,733	+	yjfZ	b4204	0.10	+0.1
4,424,733	+	yjfZ	b4204	0.10	-1.7
4,424,733	+	yjfZ	b4204	0.10	+0.6
4,424,733	+	yjfZ	b4204	0.10	-1.9
4,424,733	+	yjfZ	b4204	0.10	-0.6
4,424,744	-	yjfZ	b4204	0.12	-0.9
4,424,747	+	yjfZ	b4204	0.12	-1.0
4,424,747	+	yjfZ	b4204	0.12	-0.4
4,424,747	+	yjfZ	b4204	0.12	+0.4
4,424,749	-	yjfZ	b4204	0.12	+0.6
4,424,755	-	yjfZ	b4204	0.13	+0.3
4,424,755	-	yjfZ	b4204	0.13	-0.7
4,424,755	-	yjfZ	b4204	0.13	+1.1
4,424,755	-	yjfZ	b4204	0.13	+0.1
4,424,755	-	yjfZ	b4204	0.13	-0.3
4,424,844	-	yjfZ	b4204	0.24	-0.5
4,424,844	-	yjfZ	b4204	0.24	+0.3
4,424,855	+	yjfZ	b4204	0.26	+0.1
4,424,878	+	yjfZ	b4204	0.29	+0.7
4,424,881	+	yjfZ	b4204	0.29	+0.3
4,424,892	-	yjfZ	b4204	0.30	+0.6
4,424,898	-	yjfZ	b4204	0.31	+1.1
4,424,898	-	yjfZ	b4204	0.31	-1.2
4,424,906	+	yjfZ	b4204	0.32	-1.0
4,424,906	+	yjfZ	b4204	0.32	-0.5
4,424,909	-	yjfZ	b4204	0.32	+0.2
4,424,909	-	yjfZ	b4204	0.32	+0.6
4,424,909	-	yjfZ	b4204	0.32	-0.9
4,424,909	-	yjfZ	b4204	0.32	-0.1
4,424,915	+	yjfZ	b4204	0.33	+1.6
4,424,915	+	yjfZ	b4204	0.33	-1.8
4,424,916	+	yjfZ	b4204	0.33	-0.1
4,424,916	+	yjfZ	b4204	0.33	+1.6
4,424,946	-	yjfZ	b4204	0.37	+0.1
4,424,960	-	yjfZ	b4204	0.39	-0.1
4,424,960	-	yjfZ	b4204	0.39	-1.6
4,424,972	+	yjfZ	b4204	0.40	+1.1
4,424,975	+	yjfZ	b4204	0.41	-1.0
4,424,976	+	yjfZ	b4204	0.41	+0.1
4,424,981	+	yjfZ	b4204	0.42	+3.5
4,424,983	-	yjfZ	b4204	0.42	+3.3
4,424,984	-	yjfZ	b4204	0.42	+1.4
4,424,989	-	yjfZ	b4204	0.43	-0.5
4,425,003	+	yjfZ	b4204	0.44	+1.5
4,425,003	+	yjfZ	b4204	0.44	-3.2
4,425,003	+	yjfZ	b4204	0.44	-0.4
4,425,003	+	yjfZ	b4204	0.44	-2.6
4,425,003	+	yjfZ	b4204	0.44	-0.2
4,425,003	+	yjfZ	b4204	0.44	+0.8
4,425,003	+	yjfZ	b4204	0.44	+0.7
4,425,003	+	yjfZ	b4204	0.44	-2.1
4,425,003	+	yjfZ	b4204	0.44	-1.2
4,425,005	+	yjfZ	b4204	0.45	-2.0
4,425,008	+	yjfZ	b4204	0.45	-3.1
4,425,025	-	yjfZ	b4204	0.47	-0.7
4,425,060	+	yjfZ	b4204	0.51	+2.0