Strain Fitness in Escherichia coli BW25113 around b3475

Experiment: Ying_Others16 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep C; time point 1
3,609,998	+	yhhT	b3474	0.10	-0.2
3,609,998	+	yhhT	b3474	0.10	-0.3
3,609,998	-	yhhT	b3474	0.10	-0.3
3,610,003	-	yhhT	b3474	0.11	+0.8
3,610,045	+	yhhT	b3474	0.15	+0.1
3,610,049	-	yhhT	b3474	0.15	-0.2
3,610,049	-	yhhT	b3474	0.15	+0.7
3,610,062	+	yhhT	b3474	0.17	+0.3
3,610,062	+	yhhT	b3474	0.17	+0.8
3,610,070	-	yhhT	b3474	0.17	+1.2
3,610,080	-	yhhT	b3474	0.18	+0.1
3,610,104	-	yhhT	b3474	0.21	-2.1
3,610,124	+	yhhT	b3474	0.22	-0.3
3,610,124	+	yhhT	b3474	0.22	+0.8
3,610,131	+	yhhT	b3474	0.23	+0.6
3,610,144	+	yhhT	b3474	0.24	+0.7
3,610,144	+	yhhT	b3474	0.24	+0.0
3,610,217	-	yhhT	b3474	0.31	-0.2
3,610,217	-	yhhT	b3474	0.31	-0.7
3,610,290	+	yhhT	b3474	0.38	-1.1
3,610,290	+	yhhT	b3474	0.38	-0.2
3,610,304	+	yhhT	b3474	0.40	+0.0
3,610,304	+	yhhT	b3474	0.40	-1.0
3,610,440	+	yhhT	b3474	0.53	-0.4
3,610,448	-	yhhT	b3474	0.53	+0.0
3,610,463	-	yhhT	b3474	0.55	+0.6
3,610,474	+	yhhT	b3474	0.56	+0.5
3,610,474	+	yhhT	b3474	0.56	+0.2
3,610,482	-	yhhT	b3474	0.57	-0.7
3,610,482	-	yhhT	b3474	0.57	-0.4
3,610,505	+	yhhT	b3474	0.59	+0.1
3,610,516	+	yhhT	b3474	0.60	-0.1
3,610,533	+	yhhT	b3474	0.61	+1.1
3,610,546	-	yhhT	b3474	0.63	-0.2
3,610,546	-	yhhT	b3474	0.63	+0.6
3,610,559	+	yhhT	b3474	0.64	-0.2
3,610,577	-	yhhT	b3474	0.66	+0.7
3,610,598	+	yhhT	b3474	0.68	-1.2
3,610,644	+	yhhT	b3474	0.72	-2.5
3,610,757	+	yhhT	b3474	0.83	+1.0
3,610,757	+	yhhT	b3474	0.83	+2.2
3,610,760	-	yhhT	b3474	0.83	-1.0
3,610,762	+	yhhT	b3474	0.83	+0.1
3,610,837	+				+0.2
3,610,837	+				-0.5
3,610,944	+				+1.1
3,610,946	+				-0.6
3,610,989	+				+0.3
3,610,992	-				-1.2
3,611,002	-				-0.5
3,611,002	-				-0.4
3,611,031	-				-1.7
3,611,059	+	acpT	b3475	0.11	+0.4
3,611,104	+	acpT	b3475	0.19	-2.2
3,611,104	+	acpT	b3475	0.19	+1.8
3,611,122	+	acpT	b3475	0.22	+1.0
3,611,140	+	acpT	b3475	0.25	+0.2
3,611,149	+	acpT	b3475	0.27	+1.1
3,611,149	+	acpT	b3475	0.27	+1.0
3,611,200	+	acpT	b3475	0.35	+0.4
3,611,214	+	acpT	b3475	0.38	+0.2
3,611,234	+	acpT	b3475	0.41	+0.4
3,611,234	+	acpT	b3475	0.41	+1.0
3,611,242	-	acpT	b3475	0.43	-0.8
3,611,242	-	acpT	b3475	0.43	-0.5
3,611,320	+	acpT	b3475	0.56	+0.9
3,611,407	+	acpT	b3475	0.71	-0.2
3,611,407	+	acpT	b3475	0.71	+0.8
3,611,409	+	acpT	b3475	0.71	+0.7
3,611,447	-	acpT	b3475	0.77	+0.9
3,611,447	-	acpT	b3475	0.77	+1.2
3,611,455	+	acpT	b3475	0.79	-0.7
3,611,529	-				-0.3
3,611,530	+				-0.0
3,611,530	+				+0.0
3,611,538	-				+1.2
3,611,538	-				-0.2
3,611,595	+				+0.4
3,611,682	+				-1.9
3,611,682	+				+1.1
3,611,692	+				-0.4
3,611,779	+				-0.8
3,611,787	-				-0.8
3,611,802	+				-0.6
3,611,823	+				-0.3
3,611,823	-				-0.6
3,611,823	-				-0.2
3,611,823	-				-0.4
3,611,831	-				-0.4
3,611,831	-				-3.1
3,611,853	-	nikA	b3476	0.10	+0.1
3,611,930	-	nikA	b3476	0.15	+0.4
3,611,946	+	nikA	b3476	0.16	+0.0
3,611,952	-	nikA	b3476	0.17	+1.0
3,611,956	+	nikA	b3476	0.17	+0.8
3,611,956	+	nikA	b3476	0.17	-1.0
3,612,028	+	nikA	b3476	0.21	+0.5
3,612,028	+	nikA	b3476	0.21	+0.6
3,612,094	+	nikA	b3476	0.26	+0.0
3,612,130	+	nikA	b3476	0.28	+1.6
3,612,163	-	nikA	b3476	0.30	-0.3
3,612,272	+	nikA	b3476	0.37	-1.1
3,612,403	+	nikA	b3476	0.45	-0.4
3,612,480	+	nikA	b3476	0.50	+1.0
3,612,480	+	nikA	b3476	0.50	-0.0
3,612,560	-	nikA	b3476	0.55	-0.5
3,612,560	-	nikA	b3476	0.55	+0.4